Commits for chmalee

v399_base to v400_preview (2020-06-01 to 2020-06-08) v400

bd2d35635bdfcfa6ddea367370bcab60b490291d Tue Jun 2 17:27:24 2020 -0700

• Make hgvsToVcf write error messages to stderr so comment lines don't mess up the VCF header
  • src/hg/utils/hgvsToVcf/hgvsToVcf.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hgvsToVcf/tests/expected/clinVarChanges.err - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/hgvsToVcf/tests/expected/clinVarChanges.vcf - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/hgvsToVcf/tests/expected/testShifting.err - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/utils/hgvsToVcf/tests/makefile - lines changed 4, context: html, text, full: html, text

c9d5c3eeb09a866dbc81d9732431c6ff0c096666 Sun Jun 7 15:46:27 2020 -0700

• Add maxWindowToDraw trackDb support to vcfPhasedTrio and limit 1000G phased trio track to 5MB. Also change up some of the UI labels, refs #25582
  • src/hg/hgTracks/hgTracks.h - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/vcfTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text