ea4c7a498b1828d64c1448a36c42abb7197c73f0 abenetpa Tue Jun 9 15:28:28 2020 -0700 added html to tracks refs #24817 diff --git src/hg/makeDb/trackDb/human/trackDb.clinGen.ra src/hg/makeDb/trackDb/human/trackDb.clinGen.ra index baf0b3a..4ac248e 100644 --- src/hg/makeDb/trackDb/human/trackDb.clinGen.ra +++ src/hg/makeDb/trackDb/human/trackDb.clinGen.ra @@ -1,55 +1,58 @@ track clinGenSuper shortLabel ClinGen longLabel Clinical Genome Resource group phenDis superTrack on +html clinGen track dosageSensitivity parent clinGenSuper on shortLabel ClinGen Dosage Sensitivity longLabel Clinical Genome Resource Dosage Sensitivity Map visibility pack type bigBed 9 + itemRgb on compositeTrack on + html clinGenDosage track clinGenHaplo parent dosageSensitivity shortLabel ClinGen Haploinsufficiency longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/clinGen/clinGenHaplo.bb mouseOverField _mouseOver filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely filterLabel.haploScore Dosage Sensitivity Score track clinGenTriplo parent dosageSensitivity shortLabel ClinGen Triplosensitivity longLabel ClinGen Dosage Sensitivity Map - Triplosensitivity visibility dense type bigBed 9 + bigDataUrl /gbdb//$D/bbi/clinGen/clinGenTriplo.bb mouseOverField _mouseOver filterValues.triploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely filterLabel.triploScore Dosage Sensitivity Score track clinGenCnv parent clinGenSuper off shortLabel ClinGen Structural Variants longLabel Clinical Genome Resource Structural Variants + html clinGenSv type bigBed 9 + itemRgb on visibility dense mergeSpannedItems off bigDataUrl /gbdb/$D/bbi/clinGen/clinGenCnv.bb mouseOverField _mouseOver filterLabel.size Variant Size filterValues.variantType copy_number_loss|loss,copy_number_gain|gain filterLabel.variantType Variant Type filterValues.clinicalInterpretation Pathogenic|pathogenic,Benign|benign filterLabel.clinicalInterpretation Clinical Significance url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI DbVar: urls pubMed="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" clinGenId="https://dosage.clinicalgenome.org/clingen_region.cgi?id=$$&page=print"