26e6a4bf36de8ad6b82e737daac654077721a7cb dschmelt Thu Jun 11 10:49:55 2020 -0700 Documenting auto-complete click suggestion feature ref #25703 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index e84a634..e2f0a01 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -1,53 +1,58 @@ <!DOCTYPE html> <!--#set var="TITLE" value="Genome Browser Queries" --> <!--#set var="ROOT" value="../.." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>Querying the Genome Browser</h1> <p> -You may browse to the default genome position of an assembly when clicking the "submit" -button or you may specify a genome position in a variety of formats.</p> +From the <a href="../../cgi-bin/hgGateway">Genomes page</a>, you can jump to the default +position of an assembly by clicking the "Go" +button or you can specify a particular genome position in a variety of formats. These same +formats are valid in the search bar above the main +<a href="../../cgi-bin/hgTracks">Genome Browser track display</a>.</p> + <p> Valid position queries can include:</p> <ul> <li> Chromosome numbers</li> <li> Chromosomal coordinate ranges</li> <li> Gene names</li> <li> Accession numbers</li> <li> An mRNA, EST or STS marker</li> <li> Keywords from the GenBank description of an mRNA</li> <li> <a href="http://varnomen.hgvs.org/" target="_blank">HGVS</a> terms</li> </ul> <p> To specify a genome position:</p> <ol> <li> Select the desired clade, genome and assembly</li> <li> - Enter the desired query in the "search term" box (see sample queries below)</li> + Enter the desired query in the "Position/Search Term" box (see sample queries + below)</li> <li> - Click the "submit" button</li> + Click the "Go" button</li> </ol> <p> Note: A query may have multiple results. If this is the case, a results page will appear listing each result along with the track it is associated with. Once selected, the result will be displayed in the Browser with a highlighted tag, making it easier to identify.</p> <h2>Sample queries</h2> <p> Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed. <table border="1"> <tr><th width="200">Query</th><th>Genome Browser Response</th></tr> <tr> <td>chr7</td>