c3410576391423b865b4014a849c8dfc7c25bea0 hiram Tue Jun 9 13:42:14 2020 -0700 files for Codis hub and sessions refs #21399 diff --git src/hg/makeDb/doc/codisHub/codisPrimers.bed src/hg/makeDb/doc/codisHub/codisPrimers.bed new file mode 100644 index 0000000..2004756 --- /dev/null +++ src/hg/makeDb/doc/codisHub/codisPrimers.bed @@ -0,0 +1,53 @@ +chr1 230769558 230769711 D1S1656.46 138 - 230769558 230769711 0 2 24,20, 0,133, +chr10 129294217 129294319 D10S1248.51 184 + 129294217 129294319 0 2 25,24, 0,78, +chr11 2170985 2171151 TH01.23 0 - 2170985 2171151 0 2 20,21, 0,145, +chr11 2170989 2171151 TH01.20 126 + 2170989 2171151 0 2 24,24, 0,138, +chr11 2170989 2171176 TH01.19 126 + 2170989 2171176 0 2 24,24, 0,163, +chr11 2170989 2171176 TH01.22 126 - 2170989 2171176 0 2 24,24, 0,163, +chr11 2171046 2171292 TH01.21 0 + 2171046 2171292 0 2 20,19, 0,227, +chr12 5983937 5984087 VWA.25 434 - 5983937 5984087 0 2 30,30, 0,120, +chr12 5983937 5984088 VWA.26 462 - 5983937 5984088 0 2 30,33, 0,118, +chr12 5984063 5984087 VWA.24 1000 + 5984063 5984087 0 2 13,8, 0,16, +chr12 5984063 5984087 VWA.24 1000 - 5984063 5984087 0 2 13,8, 0,16, +chr12 12296995 12297220 D12S391.52 50 + 12296995 12297220 0 2 20,20, 0,205, +chr13 82147920 82148112 D13S317.27 200 + 82147920 82148112 0 2 26,19, 0,173, +chr13 82147923 82148108 D13S317.28 150 + 82147923 82148108 0 2 20,20, 0,165, +chr16 86352517 86352805 D16S539.29 322 + 86352517 86352805 0 2 24,29, 0,259, +chr16 86352650 86352806 D16S539.30 26 + 86352650 86352806 0 2 20,19, 0,137, +chr18 63281580 63281907 D18S51.32 46 + 63281580 63281907 0 2 20,24, 0,303, +chr18 63281610 63281916 D18S51.31 0 - 63281610 63281916 0 2 20,20, 0,286, +chr19 29926126 29926589 D19S433.53 512 - 29926126 29926589 0 2 23,22, 0,441, +chr19 29926179 29926361 D19S433.56 250 - 29926179 29926361 0 2 23,25, 0,157, +chr19 29926187 29926361 D19S433.57 182 - 29926187 29926361 0 2 19,25, 0,149, +chr19 29926187 29926589 D19S433.54 270 - 29926187 29926589 0 2 19,22, 0,380, +chr2 1489595 1489709 TPOX.1 366 + 1489595 1489709 0 2 20,21, 0,93, +chr2 1489616 1489848 TPOX.0 918 + 1489616 1489848 0 2 24,24, 0,208, +chr2 1489616 1489848 TPOX.2 920 + 1489616 1489848 0 2 24,26, 0,206, +chr2 1489620 1489890 TPOX.3 948 + 1489620 1489890 0 2 20,18, 0,252, +chr2 68011865 68012025 D2S441.47 150 + 68011865 68012025 0 2 20,20, 0,140, +chr2 68011924 68012016 D2S441.48 182 + 68011924 68012016 0 2 23,21, 0,71, +chr2 218014833 218014982 D2S1338.49 218 - 218014833 218014982 0 2 23,23, 0,126, +chr21 19181940 19182163 D21S11.34 228 + 19181940 19182163 0 2 22,22, 0,201, +chr21 19181940 19182163 D21S11.35 292 + 19181940 19182163 0 2 22,26, 0,197, +chr21 19181944 19182165 D21S11.33 150 + 19181944 19182165 0 2 18,22, 0,199, +chr22 37140257 37140413 D22S1045.58 164 + 37140257 37140413 0 2 20,23, 0,133, +chr22 37140262 37140368 D22S1045.59 266 + 37140262 37140368 0 2 23,26, 0,80, +chr3 45540712 45540843 D3S1358.4 130 - 45540712 45540843 0 2 20,19, 0,112, +chr3 45540712 45540843 D3S1358.5 150 - 45540712 45540843 0 2 21,19, 0,112, +chr4 154587580 154587925 FGA.7 256 - 154587580 154587925 0 2 23,20, 0,325, +chr4 154587695 154587891 FGA.6 164 - 154587695 154587891 0 2 22,21, 0,175, +chr5 123775490 123775639 D5S818.9 0 - 123775490 123775639 0 2 20,20, 0,129, +chr5 123775503 123775638 D5S818.8 184 - 123775503 123775638 0 2 26,23, 0,112, +chr5 150076171 150076490 CSF1PO.10 960 - 150076171 150076490 0 2 24,24, 0,295, +chr5 150076288 150076637 CSF1PO.11 958 - 150076288 150076637 0 2 22,24, 0,325, +chr7 84160075 84160301 D7S820.13 250 - 84160075 84160301 0 2 23,25, 0,201, +chr7 84160124 84160367 D7S820.12 200 - 84160124 84160367 0 2 24,21, 0,222, +chr8 124894767 124894978 D8S1179.18 74 + 124894767 124894978 0 2 19,22, 0,189, +chr8 124894823 124895047 D8S1179.15 404 + 124894823 124895047 0 2 29,28, 0,196, +chr8 124894837 124895018 D8S1179.14 280 + 124894837 124895018 0 2 25,25, 0,156, +chrX 11296783 11296995 AMEL_X.38 286 + 11296783 11296995 0 2 21,21, 0,191, +chrX 11296873 11296979 AMEL_X.36 292 + 11296873 11296979 0 2 24,24, 0,82, +chrX 11296873 11296979 AMEL_X.37 278 + 11296873 11296979 0 2 24,23, 0,83, +chrY 6869830 6870048 AMEL_Y.41 954 - 6869830 6870048 0 2 21,21, 0,197, +chrY 6869846 6869958 AMEL_Y.39 376 - 6869846 6869958 0 2 24,24, 0,88, +chrY 6869846 6869958 AMEL_Y.40 362 - 6869846 6869958 0 2 23,24, 0,88,