938e268e16bbcd34a1c98b98919df7d9869f588b
markd
  Fri Jun 5 18:57:32 2020 -0700
imported GENCODE V35 pre-release

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index f680277..1c8ea0b 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -661,15 +661,49 @@
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     make DBS=hg38 alpha
     # if pushing public: create ticket and MARK QA READY
 
 ###
 2020-04-29 final release markd
   mkdir -p /hive/data/genomes/hg38/bed/gencodeV34
 
   repeat above, only making release month April
   ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 34 100 'April 2020'
 
 #########################################################################
+2020-06-05: import of UCSC GENCODE group processing of GENCODE V35 pre-release  (markd)
+    
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/hg38/bed/gencodeV35Pre
+    pushd /hive/data/genomes/hg38/bed/gencodeV35Pre
+
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 35 101 'June 2020'
+
+    # Update 'Release Notes' in if pushing public
+    # human/hg38/wgEncodeGencodeSuper.html
+
+    # edit human/hg38/trackDb.gencode.ra to add new .ra file include
+    make DBS=hg38
+
+    ## only if being pushed to RR (may be there from pre-release)
+    # edit all.joiner to add ~/tmp/gencodeV35.joiner
+    # verify with:
+    pushd /hive/data/genomes/hg38/bed/gencodeV35Pre
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # check tracks in browser sandbox
+    # commit all
+    make DBS=hg38 alpha
+    # if pushing public: create ticket and MARK QA READY
+#########################################################################