b85eedd6e445410736ede598ad401c6c68bee48d dschmelt Tue Jul 7 15:16:50 2020 -0700 Announcing covid tracks and 20th anniversary refs #25644 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index b5ea72c..4c6772c 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,74 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="070720"></a> +<h2>Jul. 07 2020 Three new SARS-CoV-2 (COVID) variation and +comparative Genomics tracks published; 20th Anniversary of the Genome Browser</h2> +<h3>New SARS-CoV-2 (COVID) Tracks</h3> +<p> +We are pleased to announce three new SARS-CoV-2 (COVID) data track about coronavirus variation +and conservation. Like nearly all of our tracks, the data are open-access +and downloadable through our <a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2"> +Downloads page</a> or <a href="../../cgi-bin/hgTables">Table Browser</a> page. </p> +<ul> +<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=PhyloCSF_smooth">PhyloCSF (Codon Substitution +Frequency)</a> shows protein-coding potential score for each nucleotide in the genome in each +of coding frame based on an aligning the SARS-CoV-2 genome with 44 Sarbecovirus genomes.</li> +<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=microdel">Microdeletions</a> +shows sequence deletions found among thousands of SARS-CoV-2 genomes deposited in the +<a href="https://www.gisaid.org/epiflu-applications/next-hcov-19-app/" target="_blank">GISAID +database</a> (Global Initiative on Sharing All Influenza Data). </li> +<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=multiz7way">Human CoV</a> shows an alignment +between SARS-CoV-2 and six other human-infecting coronaviruses, including SARS-CoV-1 and MERS.</li> +</ul> +<p> +We would also like to thank the many people involved in this research and publication including +the researchers Irwin Jungreis at MIT, Brianna Sierra Chrisman at Stanford, and +UCSC staff members Max Haeussler, Hiram Clawson, and Daniel Schmelter.</p> + +<h3>The 20th Anniversary of UCSC Publishing the first Human Genome</h3> +<p> +July 7, 2020 marks the 20th anniversary of UCSC publishing the first-ever human Genome +on the Internet in 2020. This was the first time that the code for human life was +replicated and spread through computers instead of through biological means. +We are lucky to have some of the original publishers still with us at the Genome Browser. +Thank you, David Haussler and Jim Kent for your incredible effort pushing forward the field of human +genomics and open-source data sharing.</p> +<p> +For a timeline and pictures, please visit the +<a href="https://ucscgenomics.soe.ucsc.edu/event/ +20th-anniversary-of-publishing-the-human-genome-to-the-internet/"> +Genomics Institute's article on the anniversary</a> as well as this short video +commemorating the occasion:</p> +<p><iframe width="560" height="315" src="https://www.youtube.com/embed/_6caCfvMIiY" +?rel=0" +frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" +allowfullscreen></iframe></p> + <a name="070120"></a> <h2>Jul. 01, 2020 New video: Making links to the Genome Browser. Part 1: Dissecting / Understanding the URL</h2> <p> We are happy to announce another release to the UCSC Genome Browser <a href = "https://bit.ly/ucscVideos" target = _blank>YouTube channel</a>. </p> <p> This new video, <a href = "https://bit.ly/ucscVid21" target = _blank>Making links to the UCSC Genome Browser. Part 1: Dissecting / Understanding the URL</a>, is Part One of a three-part series showing how to make