b85eedd6e445410736ede598ad401c6c68bee48d
dschmelt
  Tue Jul 7 15:16:50 2020 -0700
Announcing covid tracks and 20th anniversary refs #25644

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         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
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 <!-- ============= 2020 archived news ============= -->
 <a name="2020"></a>
 
+<a name="070720"></a>
+<h2>Jul. 07 2020 &nbsp;&nbsp; Three new SARS-CoV-2 (COVID) variation and 
+comparative Genomics tracks published; 20th Anniversary of the Genome Browser</h2>
+<h3>New SARS-CoV-2 (COVID) Tracks</h3>
+<p>
+We are pleased to announce three new SARS-CoV-2 (COVID) data track about coronavirus variation 
+and conservation. Like nearly all of our tracks, the data are open-access
+and downloadable through our <a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2">
+Downloads page</a> or <a href="../../cgi-bin/hgTables">Table Browser</a> page. </p>
+<ul>
+<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=PhyloCSF_smooth">PhyloCSF (Codon Substitution 
+Frequency)</a> shows protein-coding potential score for each nucleotide in the genome in each
+of coding frame based on an aligning the SARS-CoV-2 genome with 44 Sarbecovirus genomes.</li> 
+<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=microdel">Microdeletions</a> 
+shows sequence deletions found among thousands of SARS-CoV-2 genomes deposited in the 
+<a href="https://www.gisaid.org/epiflu-applications/next-hcov-19-app/" target="_blank">GISAID 
+database</a> (Global Initiative on Sharing All Influenza Data). </li>
+<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=multiz7way">Human CoV</a> shows an alignment
+between SARS-CoV-2 and six other human-infecting coronaviruses, including SARS-CoV-1 and MERS.</li>
+</ul>
+<p>
+We would also like to thank the many people involved in this research and publication including 
+the researchers Irwin Jungreis at MIT, Brianna Sierra Chrisman at Stanford, and
+UCSC staff members Max Haeussler, Hiram Clawson, and Daniel Schmelter.</p>  
+
+<h3>The 20th Anniversary of UCSC Publishing the first Human Genome</h3>
+<p>
+July 7, 2020 marks the 20th anniversary of UCSC publishing the first-ever human Genome 
+on the Internet in 2020. This was the first time that the code for human life was
+replicated and spread through computers instead of through biological means. 
+We are lucky to have some of the original publishers still with us at the Genome Browser.
+Thank you, David Haussler and Jim Kent for your incredible effort pushing forward the field of human
+genomics and open-source data sharing.</p>
+<p>
+For a timeline and pictures, please visit the 
+<a href="https://ucscgenomics.soe.ucsc.edu/event/
+20th-anniversary-of-publishing-the-human-genome-to-the-internet/">
+Genomics Institute's article on the anniversary</a> as well as this short video
+commemorating the occasion:</p>
+<p><iframe width="560" height="315" src="https://www.youtube.com/embed/_6caCfvMIiY" 
+?rel=0" 
+frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" 
+allowfullscreen></iframe></p>
+
 <a name="070120"></a>
 <h2>Jul. 01, 2020 &nbsp;&nbsp; New video: Making links to the Genome Browser. 
 Part 1:  Dissecting / Understanding the URL</h2>
 
 <p>
 We are happy to announce another release to the UCSC Genome Browser 
 <a href = "https://bit.ly/ucscVideos"
 target = _blank>YouTube channel</a>.
 </p>
 
 <p>
 This new video, <a href = 
 "https://bit.ly/ucscVid21" target = _blank>Making links to the UCSC Genome Browser.  
 Part 1: Dissecting / 
 Understanding the URL</a>, is Part One of a three-part series showing how to make