45aff60448645331b37278bb57faa67a2e0a7825
lrnassar
  Thu Jul 9 14:03:01 2020 -0700
Adding new assembly panPan3 to newsArch page #25720

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     <div class="col-sm-3">
       <ul>
         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2020 archived news ============= -->
 <a name="2020"></a>
 
+<a name="071020"></a>
+<h2>Jul. 10, 2020 &nbsp;&nbsp; New Genome Browsers: Dog (canFam4) and Bonobo (panPan3)</h2>
+<p>
+Genome browsers are now available for the <em>Canis lupus familiaris</em> assembly released 
+in March 2020 by <a href="https://www.uu.se/en" target="_blank">Uppsala University</a> 
+(UU_Cfam_GSD_1.0), and the <em>Pan paniscus</em> assembly released in May 2020 by the 
+<a href="https://www.washington.edu/" target="_blank">University of Washington</a> 
+(Mhudiblu_PPA_v0).</p>
+<h3>About the assembly (canFam4):</h3>
+<ul>
+  <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=canFam4" 
+  target="_blank">canFam4</a></li>
+  <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.uu.se/en">
+Uppsala University</a></li>
+  <li><b>Assembly date:</b> Mar. 2020</li>
+  <li><B>Accession ID:</B> GCA_011100685.1</li>
+  <li><B>NCBI Genome ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/genome/85'
+TARGET='_blank'>85</A> (<em>Canis lupus familiaris</em>)</li>
+  <li><B>NCBI Assembly ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/assembly/6119491'
+TARGET='_blank'>6119491</A></li>
+  <li><B>NCBI BioProject ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/bioproject/587469'
+TARGET='_blank'>587469</A></li>
+  <li><B>NCBI BioSample ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/biosample/SAMN13230619'
+TARGET='_blank'>SAMN13230619</A></li>
+  <li><b>Scaffold count: </b>2,198</li>
+  <li><b>Total size: </b>2,482,000,080</li>
+  <li><a href="../goldenPath/credits.html#dog_credits" 
+target="_blank" >Acknowledgments</a></li>
+</ul>
+<h3>About the assembly (panPan3):</h3>
+<ul>
+  <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=panPan3" 
+  target="_blank">panPan3</a></li>
+  <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.washington.edu/">
+University of Washington</a></li>
+  <li><b>Assembly date:</b> May 2020</li>
+  <li><B>Accession ID:</B> GCF_013052645.1</li>
+  <li><B>NCBI Genome ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/genome/10729'
+TARGET='_blank'>10729</A> (<em>Pan paniscus</em>)</li>
+  <li><B>NCBI Assembly ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/assembly/7133581'
+TARGET='_blank'>7133581</A></li>
+  <li><B>NCBI BioProject ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/bioproject/526933'
+TARGET='_blank'>526933</A></li>
+  <li><B>NCBI BioSample ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/biosample/SAMN11123633'
+TARGET='_blank'>SAMN11123633</A></li>
+  <li><b>Scaffold count: </b>4,357</li>
+  <li><b>Total size: </b>3,051,901,337</li>
+  <li><a href="../goldenPath/credits.html#bonobo_credits" 
+target="_blank" >Acknowledgments</a></li>
+</ul>
+<h3>Data and Downloads:</h3>
+<ul>
+  <li><a href="../goldenPath/credits.html#dog_use" 
+target="_blank" >Data use conditions and restrictions</a></li>
+  <li><a href="../goldenPath/help/ftp.html" 
+target="_blank" >Rsync</a></li>
+  <li>FTP: <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/canFam4/" 
+target="_blank" >Dog</a> and
+<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/panPan3/" 
+target="_blank" >Bonobo</a></li>
+  <li>Downloads page: <a href="http://hgdownload.soe.ucsc.edu/downloads.html#dog"
+target="_blank" >Dog</a> and
+<a href="http://hgdownload.soe.ucsc.edu/downloads.html#bonobo"
+target="_blank" >Bonobo</li>
+</ul>
+</p>
+
 <a name="070720"></a>
 <h2>Jul. 07 2020 &nbsp;&nbsp; Three new SARS-CoV-2 (COVID) variation and 
 comparative Genomics tracks published; 20th Anniversary of the Genome Browser</h2>
 <h3>New SARS-CoV-2 (COVID) Tracks</h3>
 <p>
 We are pleased to announce three new SARS-CoV-2 (COVID) data track about coronavirus variation 
 and conservation. Like nearly all of our tracks, the data are open-access
 and downloadable through our <a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2">
 Downloads page</a> or <a href="../../cgi-bin/hgTables">Table Browser</a> page. </p>
 <ul>
 <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=PhyloCSF_smooth">PhyloCSF (Codon Substitution 
 Frequency)</a> shows protein-coding potential score for each nucleotide in the genome in each
 of coding frame based on an aligning the SARS-CoV-2 genome with 44 Sarbecovirus genomes.</li> 
 <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=microdel">Microdeletions</a> 
 shows sequence deletions found among thousands of SARS-CoV-2 genomes deposited in the