97c67666efd79c8d87918466629ee1781138797c braney Thu Jun 25 17:39:35 2020 -0700 ongoing work on gencodeV35 diff --git src/hg/hgGene/pathways.c src/hg/hgGene/pathways.c index 03e4492..ca5c6bb 100644 --- src/hg/hgGene/pathways.c +++ src/hg/hgGene/pathways.c @@ -154,31 +154,31 @@ { if (!sqlTableExists(conn, "rgdGene2Xref")) return; } else { if (!sqlTableExists(conn, "kgXref")) return; } if (isRgdGene(conn)) { sqlSafefFrag(condStr, sizeof(condStr), "name='%s'", geneId); spID = sqlGetField(database, "rgdGene2ToUniProt", "value", condStr); } else { sqlSafefFrag(condStr, sizeof(condStr), "kgID='%s'", geneId); - spID = sqlGetField(database, "kgXref", "spID", condStr); + spID = sqlGetField(sqlGetDatabase(conn), "kgXref", "spID", condStr); } if (spID != NULL) { /* convert splice variant UniProt ID to its main root ID */ chp = strstr(spID, "-"); if (chp != NULL) *chp = '\0'; hPrintf( "<BR>Protein %s (<A href=\"http://www.reactome.org/cgi-bin/link?SOURCE=UniProt&ID=%s\" TARGET=_blank>Reactome details)</A> participates in the following event(s):<BR><BR>" , spID, spID); conn2= hAllocConn(database); sqlSafef(query2,sizeof(query2), "select eventID, eventDesc from proteome.spReactomeEvent where spID='%s'", spID);