97c67666efd79c8d87918466629ee1781138797c
braney
Thu Jun 25 17:39:35 2020 -0700
ongoing work on gencodeV35
diff --git src/hg/hgGene/pathways.c src/hg/hgGene/pathways.c
index 03e4492..ca5c6bb 100644
--- src/hg/hgGene/pathways.c
+++ src/hg/hgGene/pathways.c
@@ -154,31 +154,31 @@
{
if (!sqlTableExists(conn, "rgdGene2Xref")) return;
}
else
{
if (!sqlTableExists(conn, "kgXref")) return;
}
if (isRgdGene(conn))
{
sqlSafefFrag(condStr, sizeof(condStr), "name='%s'", geneId);
spID = sqlGetField(database, "rgdGene2ToUniProt", "value", condStr);
}
else
{
sqlSafefFrag(condStr, sizeof(condStr), "kgID='%s'", geneId);
- spID = sqlGetField(database, "kgXref", "spID", condStr);
+ spID = sqlGetField(sqlGetDatabase(conn), "kgXref", "spID", condStr);
}
if (spID != NULL)
{
/* convert splice variant UniProt ID to its main root ID */
chp = strstr(spID, "-");
if (chp != NULL) *chp = '\0';
hPrintf(
"
Protein %s (Reactome details) participates in the following event(s):
"
, spID, spID);
conn2= hAllocConn(database);
sqlSafef(query2,sizeof(query2),
"select eventID, eventDesc from proteome.spReactomeEvent where spID='%s'", spID);