623c5f7d897098f43ae95b5a16c6a15a2ee9301b hiram Mon Jun 22 14:06:22 2020 -0700 panPan3 done and QA ready refs #25720 diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt index 396679f..9143ae1 100644 --- src/hg/makeDb/doc/mm10.txt +++ src/hg/makeDb/doc/mm10.txt @@ -17885,21 +17885,21 @@ time (doBlastzChainNet.pl -verbose=2 \ /hive/data/genomes/mm10/bed/lastzPanPan3.2020-06-15/DEF \ -swap -chainMinScore=3000 -chainLinearGap=medium \ -workhorse=hgwdev -smallClusterHub=hgwdev -bigClusterHub=ku \ -syntenicNet) > swap.log 2>&1 # real 55m23.982s cat fb.panPan3.chainMm10Link.txt # 954214151 bases of 3015350297 (31.645%) in intersection cat fb.panPan3.chainSynMm10Link.txt # 887980807 bases of 3015350297 (29.449%) in intersection time (doRecipBest.pl -load -workhorse=hgwdev -buildDir=`pwd` panPan3 mm10) \ > rbest.log 2>&1 -XXX - running - Tue Jun 16 12:57:31 PDT 2020 - # real 620m0.039s + # real 305m11.756s - cat fb.panPan3.chainRBest.Mm01.txt + cat fb.panPan3.chainRBest.Mm10.txt + # 889360051 bases of 3015350297 (29.494%) in intersection ##############################################################################