881d5bfc5cc2eb0bbff1856c42a2fc3c846ff6c7 jnavarr5 Tue Jun 23 10:58:52 2020 -0700 Using hg38 instead of hg19 in the announcement for the ENCODE cCREs track, refs #24668 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 346d620..2949c9c 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -65,31 +65,31 @@ The updated track now includes 33,039,051 chains, and should provide improved sensitivity for pseudogenes and other homologous regions. For more information, see the track <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&c=chr16&g=chainSelf">description page</a>.</p> <p> We would like to thank Angie Hinrichs, Anna Benet-Pages, and Lou Nassar for the development and release of this track.</p> <a name="061820"></a> <h2>Jun. 18, 2020 New ENCODE cCREs track available for human and mouse (hg38 and mm10) </h2> <p> We are pleased to announce the <em>ENCODE Registry of candidate cis-Regulatory Elements</em> (cCREs) track for the human and mouse genomes (<a href="../../cgi-bin/hgTrackUi?db=hg38&c=chrX&g=encodeCcreCombined" -target="_blank">GRCh37/hg19</a> and +target="_blank">GRCh38/hg38</a> and <a href="../../cgi-bin/hgTrackUi?db=mm10&c=chrX&g=encodeCcreCombined" target="_blank">GRCm38/mm10</a>). cCREs are the subset of representative DNase hypersensitive sites across ENCODE and Roadmap Epigenomics samples that are supported by either histone modifications (H3K4me3 and H3K27ac) or CTCF-binding data. The Registry of cCREs is one of the core components of the integrative level of the <a href="https://www.encodeproject.org/" target="_blank">ENCODE Encyclopedia of DNA Elements</a>. A total of 926,535 elements for human and 339,815 elements for mouse were identified and classified by the ENCODE Data Analysis Center according to biochemical signatures.</p> <a href="http://genome.ucsc.edu/s/Kate/hg38%20ENCODE%20cCRE%20announcement%20largeprint" target="_blank"> <img style="margin-left" width="950px" src="../images/ccreAnnouncementScreenshot.png"></a> <p> CCREs are colored and labeled according to classification by regulatory signature: