1436ad57e2be4d9763b695eef131b28ba648df46
markd
  Thu Jun 25 11:44:18 2020 -0700
added all.joiner schema for new gencode structure

diff --git src/hg/makeDb/outside/gencode/gencodeHgGene2Load.mk src/hg/makeDb/outside/gencode/gencodeHgGene2Load.mk
index 05c4e84..626be03 100644
--- src/hg/makeDb/outside/gencode/gencodeHgGene2Load.mk
+++ src/hg/makeDb/outside/gencode/gencodeHgGene2Load.mk
@@ -392,29 +392,29 @@
 ##
 # compare number of tracks with previous
 ##
 cmpRelease: gencode-cmp.tsv
 
 gencode-cmp.tsv: loadTables
 	@echo 'table	V${prevVer}	V${ver}	delta'  >$@.tmp
 	@for tab in ${allTables} ; do \
 	    prevTab=$$(echo "$$tab" | sed 's/V${ver}/V${prevVer}/g') ; \
 	    echo "$${tab}	"$$(hgsql -Ne "select count(*) from $${prevTab}" ${db})"	"$$(hgsql -Ne "select count(*) from $${tab}" ${db}) ; \
 	done | tawk '{print $$1, $$2, $$3, $$3-$$2}' >>$@.tmp
 	mv -f $@.tmp $@
 
 joinerCheck: loadTables
 	@mkdir -p check
-	for tbl in $$(hgsql -Ne 'show tables like "gencode%V${ver}"' ${db} ; do \
+	for tbl in $$(hgsql -Ne 'show tables like "gencode%V${ver}"' ${db}) ; do \
 	    echo  table=$$tbl; \
 	    runJoiner.csh ${db} $$tbl ~/kent/src/hg/makeDb/schema/all.joiner noTimes; \
 	    done >check/joiner.out 2>&1
 	if fgrep Error: check/joiner.out ; then false;  else true; fi
 
 
 clean:
 	rm -rf ${dataDir} ${tableDir} ${loadedDir} ${checkDir}
 
 dropTables:  ${allTables:%=%.drop}
 %.drop:
 	hgsql ${db} -e 'drop table if exists $*'