0e4e6f324c4da85747574333a6dde08d24172fa1
max
  Wed Jun 24 08:20:55 2020 -0700
growing the two clinvar tracks to adulthood, as they don't need a parent anymore, refs #24850

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
index cbb7b8d..cca33a2 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
@@ -1,53 +1,47 @@
-track clinvar
-compositeTrack on
-shortLabel ClinVar Variants
-longLabel ClinVar Variants
-group phenDis
-visibility hide
-type bed 12 +
-itemRgb on
-urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
-#scoreLabel ClinVar Star-Rating (0-4)
-noScoreFilter on
-
 track clinvarMain
-    shortLabel ClinVar Short Variants
+shortLabel ClinVar SNVs
 longLabel ClinVar Short Variants < 50bp
-    visibility pack
-    parent clinvar
+visibility hide
+group phenDis
+itemRgb on
 priority 1
 type bigBed 12 +
 filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
 filterType._clinSignCode singleList
 filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
 filterType._originCode singleList
 filterLabel._originCode Alelle Origin
 filterValues._allTypeCode SNV|single nucleotide variant - SNV,INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
 filterType._allTypeCode singleList
 filter._varLen 0
 filterByRange._varLen on
 filterLimits._varLen 0:49
 filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown
 mouseOverField _mouseOver
 bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
+urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+noScoreFilter on
 
 track clinvarCnv
-    shortLabel ClinVar Long Variants
-    longLabel ClinVar Long Variants >= 50bp (mostly Copy-Number Variants)
-    visibility pack
+shortLabel ClinVar CNVs
+longLabel ClinVar Copy Number Variants  (mostly Copy-Number Variants)
+visibility hide
 type bigBed 12 +
-    parent clinvar
+itemRgb on
+group phenDis
 priority 2
 filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
 filterType._originCode singleList
 filterLabel._originCode Alelle Origin
 filterValues._allTypeCode INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
 filterType._allTypeCode singleList
 filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
 filterType._clinSign singleList
 filter._varLen 50:999999999
 filterByRange._varLen on
 filterLimits._varLen 50:999999999
 mouseOverField _mouseOver
 bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb
 mergeSpannedItems on
+urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+noScoreFilter on