d5cdbbb51198d600fa48ccb13045e0f96fe45ab0 braney Sat Jul 4 08:33:37 2020 -0700 give this structure a better name diff --git src/hg/lib/gencodeBGP.as src/hg/lib/gencodeBGP.as index e74a968..ef83ca3 100644 --- src/hg/lib/gencodeBGP.as +++ src/hg/lib/gencodeBGP.as @@ -1,34 +1,34 @@ -table bigGenePred -"bigGenePred gene models" +table gencodeBGP +"GENCODE bigGenePred" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Ensembl Id" uint score; "Score (0-1000)" char[1] strand; "+ or - for strand" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" string name2; "UCSC gene id" string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" string type; "Transcript type" string geneName; "Gene Symbol" string geneName2; "UniProt display ID" string geneType; "Gene type" # high level type of transcript (from gencodeAttrs)" string transcriptClass; "Transcript Class" string source; "Source of transcript (from gencodeTranscriptSource)" string transcriptType; "BioType of transcript (from gencodeAttrs)" string tag; "symbolic tags (from gencodeTags)" string level; "support level, tsl1 is strongest support, tsl5 weakest, NA means not analyzed (from gencodeTranscriptionSupportLevel)" # tier: all, basic, canonical string tier; "Transcript Tier" )