Commits for chmalee

v401_preview to v401_preview2 (2020-06-29 to 2020-07-06) v401

dfcc30cdb7e4d1afe1ea106162e294791eb64e76 Mon Jun 29 16:54:03 2020 -0700

• Fix 'trio' ordering bug when there is only one parent and we are drawing in child,parent order, refs #25813
  • src/hg/hgTracks/vcfTrack.c - lines changed 36, context: html, text, full: html, text

3684310aca6ed1ad61468676c28a7dac37e4af59 Wed Jul 1 09:27:40 2020 -0700

• Make clingen dosage otto job more resilient to poorly formatted downloads
  • src/hg/utils/otto/clinGen/processClinGenDosage.py - lines changed 10, context: html, text, full: html, text

2e50ce74d75b4e6a6de48f143a3e9624c8cabedc Wed Jul 1 16:22:15 2020 -0700

• Always highlight child in a trio in yellow, somehow lost this code when merging branches, refs #25582
  • src/hg/hgTracks/vcfTrack.c - lines changed 3, context: html, text, full: html, text

34b96568359c6125704a1eb7455dd39e99744a72 Thu Jul 2 10:36:03 2020 -0700

• Fix up the ClinGen Dosage and CNV colors and mouseovers, refs #24818,#25562
  • src/hg/utils/otto/clinGen/processClinGenCnv.py - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/processClinGenDosage.py - lines changed 14, context: html, text, full: html, text

181407cccdc208bb3ff3d0dd7caa8c252638af5b Thu Jul 2 11:07:05 2020 -0700

• Add 'Common' to dbVar labels after feedback from NCBI
  • src/hg/makeDb/trackDb/human/trackDb.dbVar.ra - lines changed 2, context: html, text, full: html, text

5f5b72d8ea8afcaf45d87c9cd1024c65edcee108 Thu Jul 2 12:20:43 2020 -0700

• Change some checkbox labels and add an info icon for phased trio display, refs #25582
  • src/hg/lib/vcfUi.c - lines changed 6, context: html, text, full: html, text