a1691f6b23c5406023f8743fe131af96c5539f18 hiram Wed Jul 1 12:40:32 2020 -0700 correct Bob Harris reference for lastz refs #25827 diff --git src/hg/makeDb/trackDb/chainNet.html src/hg/makeDb/trackDb/chainNet.html index b0c122c..2cf4d47 100644 --- src/hg/makeDb/trackDb/chainNet.html +++ src/hg/makeDb/trackDb/chainNet.html @@ -132,31 +132,38 @@ program.</P> <P> The axtChain program was developed at the University of California at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.</P> <P> The browser display and database storage of the chains and nets were created by Robert Baertsch and Jim Kent.</P> <P> The chainNet, netSyntenic, and netClass programs were developed at the University of California Santa Cruz by Jim Kent.</P> <P> <h2>References</h2> -<P> +<p> +Harris, R.S. +<a href="http://www.bx.psu.edu/~rsharris/lastz/" +target=_blank>(2007) Improved pairwise alignment of genomic DNA</a> +Ph.D. Thesis, The Pennsylvania State University +</p> + +<p> Chiaromonte F, Yap VB, Miller W. <A HREF="http://psb.stanford.edu/psb-online/proceedings/psb02/chiaromonte.pdf" TARGET=_blank>Scoring pairwise genomic sequence alignments</A>. <em>Pac Symp Biocomput</em>. 2002:115-26. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11928468" target="_blank">11928468</a> </p> <P> Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. <A HREF="https://www.pnas.org/content/100/20/11484" TARGET=_blank>Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes</A>. <em>Proc Natl Acad Sci U S A</em>. 2003 Sep 30;100(20):11484-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/14500911" target="_blank">14500911</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC208784/" target="_blank">PMC208784</a>