148cd685553c26bb02f7d6e9cde931a153faa7d8 hiram Tue Jun 30 14:12:33 2020 -0700 now correctly numbering reverse strand exons refs #25379 diff --git src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf index a9ad025..9765e07 100644 --- src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf +++ src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf @@ -1,161 +1,161 @@ chr2 test transcript 32303024 32344305 . - . gene_id "NM_021209"; transcript_id "NM_021209"; -chr2 test exon 32303024 32303338 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; -chr2 test 3UTR 32303024 32303045 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; -chr2 test CDS 32303049 32303338 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; -chr2 test exon 32313974 32314141 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; -chr2 test CDS 32313974 32314141 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; -chr2 test exon 32314820 32314912 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "3"; exon_id "NM_021209.3"; -chr2 test CDS 32314820 32314912 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "3"; exon_id "NM_021209.3"; -chr2 test exon 32316705 32316875 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "4"; exon_id "NM_021209.4"; -chr2 test CDS 32316705 32316875 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "4"; exon_id "NM_021209.4"; +chr2 test exon 32303024 32303338 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; +chr2 test 3UTR 32303024 32303045 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; +chr2 test CDS 32303049 32303338 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; +chr2 test exon 32313974 32314141 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; +chr2 test CDS 32313974 32314141 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; +chr2 test exon 32314820 32314912 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "7"; exon_id "NM_021209.7"; +chr2 test CDS 32314820 32314912 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "7"; exon_id "NM_021209.7"; +chr2 test exon 32316705 32316875 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "6"; exon_id "NM_021209.6"; +chr2 test CDS 32316705 32316875 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "6"; exon_id "NM_021209.6"; chr2 test exon 32319606 32319698 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "5"; exon_id "NM_021209.5"; chr2 test CDS 32319606 32319698 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "5"; exon_id "NM_021209.5"; -chr2 test exon 32328180 32330174 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "6"; exon_id "NM_021209.6"; -chr2 test CDS 32328180 32330174 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "6"; exon_id "NM_021209.6"; -chr2 test exon 32330992 32331252 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "7"; exon_id "NM_021209.7"; -chr2 test CDS 32330992 32331252 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "7"; exon_id "NM_021209.7"; -chr2 test exon 32335348 32335466 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; -chr2 test CDS 32335348 32335348 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; -chr2 test 5UTR 32335349 32335466 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; -chr2 test exon 32344160 32344305 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; -chr2 test 5UTR 32344160 32344305 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; -chr2 test start_codon 32331251 32331252 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "7"; exon_id "NM_021209.7"; -chr2 test start_codon 32335348 32335348 . - 1 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "8"; exon_id "NM_021209.8"; -chr2 test stop_codon 32303046 32303048 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; +chr2 test exon 32328180 32330174 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "4"; exon_id "NM_021209.4"; +chr2 test CDS 32328180 32330174 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "4"; exon_id "NM_021209.4"; +chr2 test exon 32330992 32331252 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "3"; exon_id "NM_021209.3"; +chr2 test CDS 32330992 32331252 . - 2 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "3"; exon_id "NM_021209.3"; +chr2 test exon 32335348 32335466 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; +chr2 test CDS 32335348 32335348 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; +chr2 test 5UTR 32335349 32335466 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; +chr2 test exon 32344160 32344305 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; +chr2 test 5UTR 32344160 32344305 . - . gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "1"; exon_id "NM_021209.1"; +chr2 test start_codon 32331251 32331252 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "3"; exon_id "NM_021209.3"; +chr2 test start_codon 32335348 32335348 . - 1 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "2"; exon_id "NM_021209.2"; +chr2 test stop_codon 32303046 32303048 . - 0 gene_id "NM_021209"; transcript_id "NM_021209"; exon_number "9"; exon_id "NM_021209.9"; chr17 test transcript 74597022 74990158 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; -chr17 test exon 74597022 74598562 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "1"; exon_id "NM_001082575.1"; -chr17 test 3UTR 74597022 74598559 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "1"; exon_id "NM_001082575.1"; -chr17 test exon 74602128 74602206 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "2"; exon_id "NM_001082575.2"; -chr17 test CDS 74602128 74602206 . - 1 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "2"; exon_id "NM_001082575.2"; -chr17 test exon 74603190 74603251 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "3"; exon_id "NM_001082575.3"; -chr17 test CDS 74603190 74603251 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "3"; exon_id "NM_001082575.3"; -chr17 test exon 74604330 74604369 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; -chr17 test CDS 74604330 74604369 . - 1 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; -chr17 test exon 74604969 74605101 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "5"; exon_id "NM_001082575.5"; -chr17 test CDS 74604969 74605101 . - 2 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "5"; exon_id "NM_001082575.5"; -chr17 test exon 74605369 74605422 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "6"; exon_id "NM_001082575.6"; -chr17 test CDS 74605369 74605422 . - 2 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "6"; exon_id "NM_001082575.6"; -chr17 test exon 74609261 74609321 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "7"; exon_id "NM_001082575.7"; -chr17 test CDS 74609261 74609321 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "7"; exon_id "NM_001082575.7"; -chr17 test exon 74610839 74610931 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "8"; exon_id "NM_001082575.8"; -chr17 test CDS 74610839 74610931 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "8"; exon_id "NM_001082575.8"; -chr17 test exon 74611750 74611803 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "9"; exon_id "NM_001082575.9"; -chr17 test CDS 74611750 74611803 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "9"; exon_id "NM_001082575.9"; -chr17 test exon 74614328 74614465 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "10"; exon_id "NM_001082575.10"; -chr17 test CDS 74614328 74614465 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "10"; exon_id "NM_001082575.10"; -chr17 test exon 74623171 74623425 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; -chr17 test CDS 74623171 74623392 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; -chr17 test 5UTR 74623393 74623425 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; -chr17 test exon 74743443 74743482 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "12"; exon_id "NM_001082575.12"; -chr17 test 5UTR 74743443 74743482 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "12"; exon_id "NM_001082575.12"; -chr17 test exon 74815401 74815501 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "13"; exon_id "NM_001082575.13"; -chr17 test 5UTR 74815401 74815501 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "13"; exon_id "NM_001082575.13"; -chr17 test exon 74990131 74990158 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "14"; exon_id "NM_001082575.14"; -chr17 test 5UTR 74990131 74990158 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "14"; exon_id "NM_001082575.14"; -chr17 test start_codon 74623390 74623392 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; -chr17 test stop_codon 74598560 74598562 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "1"; exon_id "NM_001082575.1"; +chr17 test exon 74597022 74598562 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "14"; exon_id "NM_001082575.14"; +chr17 test 3UTR 74597022 74598559 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "14"; exon_id "NM_001082575.14"; +chr17 test exon 74602128 74602206 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "13"; exon_id "NM_001082575.13"; +chr17 test CDS 74602128 74602206 . - 1 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "13"; exon_id "NM_001082575.13"; +chr17 test exon 74603190 74603251 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "12"; exon_id "NM_001082575.12"; +chr17 test CDS 74603190 74603251 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "12"; exon_id "NM_001082575.12"; +chr17 test exon 74604330 74604369 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; +chr17 test CDS 74604330 74604369 . - 1 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "11"; exon_id "NM_001082575.11"; +chr17 test exon 74604969 74605101 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "10"; exon_id "NM_001082575.10"; +chr17 test CDS 74604969 74605101 . - 2 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "10"; exon_id "NM_001082575.10"; +chr17 test exon 74605369 74605422 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "9"; exon_id "NM_001082575.9"; +chr17 test CDS 74605369 74605422 . - 2 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "9"; exon_id "NM_001082575.9"; +chr17 test exon 74609261 74609321 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "8"; exon_id "NM_001082575.8"; +chr17 test CDS 74609261 74609321 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "8"; exon_id "NM_001082575.8"; +chr17 test exon 74610839 74610931 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "7"; exon_id "NM_001082575.7"; +chr17 test CDS 74610839 74610931 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "7"; exon_id "NM_001082575.7"; +chr17 test exon 74611750 74611803 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "6"; exon_id "NM_001082575.6"; +chr17 test CDS 74611750 74611803 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "6"; exon_id "NM_001082575.6"; +chr17 test exon 74614328 74614465 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "5"; exon_id "NM_001082575.5"; +chr17 test CDS 74614328 74614465 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "5"; exon_id "NM_001082575.5"; +chr17 test exon 74623171 74623425 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; +chr17 test CDS 74623171 74623392 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; +chr17 test 5UTR 74623393 74623425 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; +chr17 test exon 74743443 74743482 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "3"; exon_id "NM_001082575.3"; +chr17 test 5UTR 74743443 74743482 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "3"; exon_id "NM_001082575.3"; +chr17 test exon 74815401 74815501 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "2"; exon_id "NM_001082575.2"; +chr17 test 5UTR 74815401 74815501 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "2"; exon_id "NM_001082575.2"; +chr17 test exon 74990131 74990158 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "1"; exon_id "NM_001082575.1"; +chr17 test 5UTR 74990131 74990158 . - . gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "1"; exon_id "NM_001082575.1"; +chr17 test start_codon 74623390 74623392 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "4"; exon_id "NM_001082575.4"; +chr17 test stop_codon 74598560 74598562 . - 0 gene_id "NM_001082575"; transcript_id "NM_001082575"; exon_number "14"; exon_id "NM_001082575.14"; chr1 test transcript 4481009 4486494 . - . gene_id "NM_011441"; transcript_id "NM_011441"; -chr1 test exon 4481009 4482749 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; -chr1 test 3UTR 4481009 4481796 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; -chr1 test CDS 4481800 4482749 . - 2 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; -chr1 test exon 4483181 4483547 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; -chr1 test CDS 4483181 4483487 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; -chr1 test 5UTR 4483488 4483547 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; +chr1 test exon 4481009 4482749 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; +chr1 test 3UTR 4481009 4481796 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; +chr1 test CDS 4481800 4482749 . - 2 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; +chr1 test exon 4483181 4483547 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; +chr1 test CDS 4483181 4483487 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; +chr1 test 5UTR 4483488 4483547 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; chr1 test exon 4483853 4483944 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "3"; exon_id "NM_011441.3"; chr1 test 5UTR 4483853 4483944 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "3"; exon_id "NM_011441.3"; -chr1 test exon 4485217 4486023 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; -chr1 test 5UTR 4485217 4486023 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; -chr1 test exon 4486372 4486494 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; -chr1 test 5UTR 4486372 4486494 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; -chr1 test start_codon 4483485 4483487 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; -chr1 test stop_codon 4481797 4481799 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; +chr1 test exon 4485217 4486023 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; +chr1 test 5UTR 4485217 4486023 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "2"; exon_id "NM_011441.2"; +chr1 test exon 4486372 4486494 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; +chr1 test 5UTR 4486372 4486494 . - . gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "1"; exon_id "NM_011441.1"; +chr1 test start_codon 4483485 4483487 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "4"; exon_id "NM_011441.4"; +chr1 test stop_codon 4481797 4481799 . - 0 gene_id "NM_011441"; transcript_id "NM_011441"; exon_number "5"; exon_id "NM_011441.5"; chr1 test transcript 4334224 4350473 . - . gene_id "NM_011283"; transcript_id "NM_011283"; -chr1 test exon 4334224 4340172 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; -chr1 test 3UTR 4334224 4334680 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; -chr1 test CDS 4334684 4340172 . - 2 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; -chr1 test exon 4341991 4342162 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; -chr1 test CDS 4341991 4342162 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; -chr1 test exon 4342283 4342918 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; -chr1 test CDS 4342283 4342906 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; -chr1 test 5UTR 4342907 4342918 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; -chr1 test exon 4350281 4350473 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; -chr1 test 5UTR 4350281 4350473 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; -chr1 test start_codon 4342904 4342906 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; -chr1 test stop_codon 4334681 4334683 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; +chr1 test exon 4334224 4340172 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; +chr1 test 3UTR 4334224 4334680 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; +chr1 test CDS 4334684 4340172 . - 2 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; +chr1 test exon 4341991 4342162 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; +chr1 test CDS 4341991 4342162 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "3"; exon_id "NM_011283.3"; +chr1 test exon 4342283 4342918 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; +chr1 test CDS 4342283 4342906 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; +chr1 test 5UTR 4342907 4342918 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; +chr1 test exon 4350281 4350473 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; +chr1 test 5UTR 4350281 4350473 . - . gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "1"; exon_id "NM_011283.1"; +chr1 test start_codon 4342904 4342906 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "2"; exon_id "NM_011283.2"; +chr1 test stop_codon 4334681 4334683 . - 0 gene_id "NM_011283"; transcript_id "NM_011283"; exon_number "4"; exon_id "NM_011283.4"; chr1 test transcript 4900050 5009460 . - . gene_id "NM_021374"; transcript_id "NM_021374"; -chr1 test exon 4900050 4900743 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; -chr1 test 3UTR 4900050 4900554 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; -chr1 test CDS 4900558 4900743 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; -chr1 test exon 4902395 4902629 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "2"; exon_id "NM_021374.2"; -chr1 test CDS 4902395 4902629 . - 1 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "2"; exon_id "NM_021374.2"; +chr1 test exon 4900050 4900743 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; +chr1 test 3UTR 4900050 4900554 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; +chr1 test CDS 4900558 4900743 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; +chr1 test exon 4902395 4902629 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "4"; exon_id "NM_021374.4"; +chr1 test CDS 4902395 4902629 . - 1 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "4"; exon_id "NM_021374.4"; chr1 test exon 4906978 4907061 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "3"; exon_id "NM_021374.3"; chr1 test CDS 4906978 4907061 . - 1 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "3"; exon_id "NM_021374.3"; -chr1 test exon 4913928 4914070 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "4"; exon_id "NM_021374.4"; -chr1 test CDS 4913928 4914070 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "4"; exon_id "NM_021374.4"; -chr1 test exon 5009392 5009460 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; -chr1 test CDS 5009392 5009460 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; -chr1 test start_codon 5009458 5009460 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; -chr1 test stop_codon 4900555 4900557 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; +chr1 test exon 4913928 4914070 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "2"; exon_id "NM_021374.2"; +chr1 test CDS 4913928 4914070 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "2"; exon_id "NM_021374.2"; +chr1 test exon 5009392 5009460 . - . gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; +chr1 test CDS 5009392 5009460 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; +chr1 test start_codon 5009458 5009460 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "1"; exon_id "NM_021374.1"; +chr1 test stop_codon 4900555 4900557 . - 0 gene_id "NM_021374"; transcript_id "NM_021374"; exon_number "5"; exon_id "NM_021374.5"; chr1 test transcript 357522 358460 . + . gene_id "NM_001005224"; transcript_id "NM_001005224"; chr1 test exon 357522 358460 . + . gene_id "NM_001005224"; transcript_id "NM_001005224"; exon_number "1"; exon_id "NM_001005224.1"; chr1 test CDS 357522 358457 . + 0 gene_id "NM_001005224"; transcript_id "NM_001005224"; exon_number "1"; exon_id "NM_001005224.1"; chr1 test start_codon 357522 357524 . + 0 gene_id "NM_001005224"; transcript_id "NM_001005224"; exon_number "1"; exon_id "NM_001005224.1"; chr1 test stop_codon 358458 358460 . + 0 gene_id "NM_001005224"; transcript_id "NM_001005224"; exon_number "1"; exon_id "NM_001005224.1"; chr1 test transcript 610959 611897 . - . gene_id "NM_001005224_2"; transcript_id "NM_001005224_2"; chr1 test exon 610959 611897 . - . gene_id "NM_001005224_2"; transcript_id "NM_001005224_2"; exon_number "1"; exon_id "NM_001005224_2.1"; chr1 test CDS 610962 611897 . - 0 gene_id "NM_001005224_2"; transcript_id "NM_001005224_2"; exon_number "1"; exon_id "NM_001005224_2.1"; chr1 test start_codon 611895 611897 . - 0 gene_id "NM_001005224_2"; transcript_id "NM_001005224_2"; exon_number "1"; exon_id "NM_001005224_2.1"; chr1 test stop_codon 610959 610961 . - 0 gene_id "NM_001005224_2"; transcript_id "NM_001005224_2"; exon_number "1"; exon_id "NM_001005224_2.1"; chr5 test transcript 180726894 180727832 . + . gene_id "NM_001005224_3"; transcript_id "NM_001005224_3"; chr5 test exon 180726894 180727832 . + . gene_id "NM_001005224_3"; transcript_id "NM_001005224_3"; exon_number "1"; exon_id "NM_001005224_3.1"; chr5 test CDS 180726894 180727829 . + 0 gene_id "NM_001005224_3"; transcript_id "NM_001005224_3"; exon_number "1"; exon_id "NM_001005224_3.1"; chr5 test start_codon 180726894 180726896 . + 0 gene_id "NM_001005224_3"; transcript_id "NM_001005224_3"; exon_number "1"; exon_id "NM_001005224_3.1"; chr5 test stop_codon 180727830 180727832 . + 0 gene_id "NM_001005224_3"; transcript_id "NM_001005224_3"; exon_number "1"; exon_id "NM_001005224_3.1"; chr1 test transcript 15128883 15264879 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; chr1 test exon 15128883 15129127 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "1"; exon_id "NM_001018001.1"; chr1 test 5UTR 15128883 15129127 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "1"; exon_id "NM_001018001.1"; chr1 test exon 15159767 15159958 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "2"; exon_id "NM_001018001.2"; chr1 test 5UTR 15159767 15159822 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "2"; exon_id "NM_001018001.2"; chr1 test CDS 15159823 15159958 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "2"; exon_id "NM_001018001.2"; chr1 test exon 15233832 15233968 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "3"; exon_id "NM_001018001.3"; chr1 test CDS 15233832 15233968 . + 2 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "3"; exon_id "NM_001018001.3"; chr1 test exon 15243072 15243242 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "4"; exon_id "NM_001018001.4"; chr1 test CDS 15243072 15243242 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "4"; exon_id "NM_001018001.4"; chr1 test exon 15255174 15255363 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "5"; exon_id "NM_001018001.5"; chr1 test CDS 15255174 15255363 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "5"; exon_id "NM_001018001.5"; chr1 test exon 15259255 15259385 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "6"; exon_id "NM_001018001.6"; chr1 test CDS 15259255 15259385 . + 2 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "6"; exon_id "NM_001018001.6"; chr1 test exon 15262655 15262705 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "7"; exon_id "NM_001018001.7"; chr1 test CDS 15262655 15262705 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "7"; exon_id "NM_001018001.7"; chr1 test exon 15264713 15264879 . + . gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "8"; exon_id "NM_001018001.8"; chr1 test CDS 15264713 15264879 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "8"; exon_id "NM_001018001.8"; chr1 test start_codon 15159823 15159825 . + 0 gene_id "NM_001018001"; transcript_id "NM_001018001"; exon_number "2"; exon_id "NM_001018001.2"; chr1 test transcript 58954 59871 . + . gene_id "NM_001005484"; transcript_id "NM_001005484"; chr1 test exon 58954 59871 . + . gene_id "NM_001005484"; transcript_id "NM_001005484"; exon_number "1"; exon_id "NM_001005484.1"; chr1 test CDS 58954 59868 . + 0 gene_id "NM_001005484"; transcript_id "NM_001005484"; exon_number "1"; exon_id "NM_001005484.1"; chr1 test start_codon 58954 58956 . + 0 gene_id "NM_001005484"; transcript_id "NM_001005484"; exon_number "1"; exon_id "NM_001005484.1"; chr1 test stop_codon 59869 59871 . + 0 gene_id "NM_001005484"; transcript_id "NM_001005484"; exon_number "1"; exon_id "NM_001005484.1"; chr1 test transcript 28350117 28376286 . - . gene_id "D31736"; transcript_id "D31736"; -chr1 test exon 28350117 28350157 . - . gene_id "D31736"; transcript_id "D31736"; exon_number "1"; exon_id "D31736.1"; -chr1 test exon 28375690 28376286 . - . gene_id "D31736"; transcript_id "D31736"; exon_number "2"; exon_id "D31736.2"; -chr1 test start_codon 28350117 28350119 . - 0 gene_id "D31736"; transcript_id "D31736"; exon_number "1"; exon_id "D31736.1"; -chr1 test stop_codon 28350117 28350119 . - 0 gene_id "D31736"; transcript_id "D31736"; exon_number "1"; exon_id "D31736.1"; +chr1 test exon 28350117 28350157 . - . gene_id "D31736"; transcript_id "D31736"; exon_number "2"; exon_id "D31736.2"; +chr1 test exon 28375690 28376286 . - . gene_id "D31736"; transcript_id "D31736"; exon_number "1"; exon_id "D31736.1"; +chr1 test start_codon 28350117 28350119 . - 0 gene_id "D31736"; transcript_id "D31736"; exon_number "2"; exon_id "D31736.2"; +chr1 test stop_codon 28350117 28350119 . - 0 gene_id "D31736"; transcript_id "D31736"; exon_number "2"; exon_id "D31736.2"; chr1 test transcript 3764024 3790164 . + . gene_id "AF409062"; transcript_id "AF409062"; chr1 test exon 3764024 3764141 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "1"; exon_id "AF409062.1"; chr1 test 5UTR 3764024 3764027 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "1"; exon_id "AF409062.1"; chr1 test CDS 3764028 3764141 . + 0 gene_id "AF409062"; transcript_id "AF409062"; exon_number "1"; exon_id "AF409062.1"; chr1 test exon 3765142 3765268 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "2"; exon_id "AF409062.2"; chr1 test CDS 3765142 3765267 . + 0 gene_id "AF409062"; transcript_id "AF409062"; exon_number "2"; exon_id "AF409062.2"; chr1 test exon 3772186 3772424 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "3"; exon_id "AF409062.3"; chr1 test 3UTR 3772188 3772424 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "3"; exon_id "AF409062.3"; chr1 test exon 3774398 3774477 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "4"; exon_id "AF409062.4"; chr1 test 3UTR 3774398 3774477 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "4"; exon_id "AF409062.4"; chr1 test exon 3776029 3776199 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "5"; exon_id "AF409062.5"; chr1 test 3UTR 3776029 3776199 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "5"; exon_id "AF409062.5"; chr1 test exon 3778896 3778996 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "6"; exon_id "AF409062.6"; chr1 test 3UTR 3778896 3778996 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "6"; exon_id "AF409062.6"; chr1 test exon 3789931 3790164 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "7"; exon_id "AF409062.7"; chr1 test 3UTR 3789931 3790164 . + . gene_id "AF409062"; transcript_id "AF409062"; exon_number "7"; exon_id "AF409062.7"; chr1 test start_codon 3764028 3764030 . + 0 gene_id "AF409062"; transcript_id "AF409062"; exon_number "1"; exon_id "AF409062.1"; chr1 test stop_codon 3765268 3765268 . + 0 gene_id "AF409062"; transcript_id "AF409062"; exon_number "2"; exon_id "AF409062.2"; chr1 test stop_codon 3772186 3772187 . + 2 gene_id "AF409062"; transcript_id "AF409062"; exon_number "3"; exon_id "AF409062.3";