Commits for chmalee

v402_preview2 to v402_base (2020-07-27 to 2020-08-03) v402

be693595e590bce1d7d9b5e0d34451047c3170f2 Thu Jul 30 15:52:52 2020 -0700

• Add 2 new color options for trios, color by predicted functional affect and de novo child variants, refs #25983
  • src/hg/hgTracks/vcfTrack.c - lines changed 130, context: html, text, full: html, text
  • src/hg/inc/vcfUi.h - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

4bd3913b145415c4d24d5c6b2fa9ee5b966257c5 Fri Jul 31 11:44:52 2020 -0700

• More clinGen dosage changes after extrernal feedback, refs #24818
  • src/hg/makeDb/trackDb/human/trackDb.clinGen.ra - lines changed 22, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/makeDosage.sh - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/processClinGenDosage.py - lines changed 202, context: html, text, full: html, text

cfabc62e560b5917402da1e6d6414ba588a5367d Fri Jul 31 12:37:00 2020 -0700

• Add omim phenotypes to clinGen dosage tracks, refs #24818
  • src/hg/makeDb/trackDb/human/trackDb.clinGen.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/makeDosage.sh - lines changed 29, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/processClinGenDosage.py - lines changed 31, context: html, text, full: html, text