8e22e6e2afe9bb9df058ba48430a679702e79391 dschmelt Fri Jul 31 15:22:29 2020 -0700 Minor type fix #18419 diff --git src/hg/makeDb/trackDb/human/omimGene2.html src/hg/makeDb/trackDb/human/omimGene2.html index 9078352..e9bb83e 100644 --- src/hg/makeDb/trackDb/human/omimGene2.html +++ src/hg/makeDb/trackDb/human/omimGene2.html @@ -152,31 +152,31 @@ that can be used to retrieve data in JSON format from a particular chromosome range.

Please refer to our searchable mailing list archives for more questions and example queries, or our Data Access FAQ for more information.

Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range

  1. Go to Table Browser, make sure the following options are selected: group: Phenotype and Literature, track: OMIM Genes, table: omimGene2.
  2. Enter coordinates or a gene symbol into the "Position" textbox, such as -chr1:11,106,535-11,262,551 or MTOR.
  3. +chr1:11,166,591-11,322,608 or MTOR.
  4. Change the "Output format" dropdown to "selected fields from primary and related Tables" and click . Instead of returning the standard formatted dataset from the omimGene2 table, this bring up the data field and linked table selection page.
  5. Select chrom, chromStart, chromEnd,and name from omimGene2 table. Then select the related tables omim2gene and omimPhenotype and click . This brings up the fields of the linked tables, where you can select approvedGeneSymbol, omimID, description, omimPhenotypeMapKey, and inhMode.
  6. Click on the will bring you to the results page:
    chr1	11166591	11322608	MTOR	601231,	Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic,	3,	Autosomal dominant

For a quick link to pre-fill these options, click this session link.