8e22e6e2afe9bb9df058ba48430a679702e79391 dschmelt Fri Jul 31 15:22:29 2020 -0700 Minor type fix #18419 diff --git src/hg/makeDb/trackDb/human/omimGene2.html src/hg/makeDb/trackDb/human/omimGene2.html index 9078352..e9bb83e 100644 --- src/hg/makeDb/trackDb/human/omimGene2.html +++ src/hg/makeDb/trackDb/human/omimGene2.html @@ -152,31 +152,31 @@ that can be used to retrieve data in JSON format from a particular chromosome range.</p> <p> Please refer to our searchable <A HREF="https://groups.google.com/a/soe.ucsc.edu/forum/?hl=en&fromgroups#!search/download+snps" target=_blank>mailing list archives</a> for more questions and example queries, or our <a HREF="../FAQ/FAQdownloads.html#download36" target=_blank>Data Access FAQ</a> for more information.</p> <h4>Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range</h4> <ol> <li>Go to <a href="hgTables">Table Browser</a>, make sure the following options are selected: group: Phenotype and Literature, track: OMIM Genes, table: <tt>omimGene2</tt>.</li> <li>Enter coordinates or a gene symbol into the "Position" textbox, such as -chr1:11,106,535-11,262,551 or MTOR.</li> +chr1:11,166,591-11,322,608 or MTOR.</li> <li>Change the "Output format" dropdown to "selected fields from primary and related Tables" and click <button>get output</button>. Instead of returning the standard formatted dataset from the <tt>omimGene2</tt> table, this bring up the data field and linked table selection page.</li> <li>Select chrom, chromStart, chromEnd,and name from omimGene2 table. Then select the related tables <tt>omim2gene</tt> and <tt>omimPhenotype</tt> and click <button>allow selection from check tables</button>. This brings up the fields of the linked tables, where you can select approvedGeneSymbol, omimID, description, omimPhenotypeMapKey, and inhMode. </li> <li>Click on the <button>get output</button> will bring you to the results page: <pre>chr1 11166591 11322608 MTOR 601231, Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic, 3, Autosomal dominant</pre></li></ol> <p>For a quick link to pre-fill these options, click <a href="http://genome.ucsc.edu/cgi-bin/hgTables?hgS_doOtherUser=submit&hgS_otherUserName=dschmelt&hgS_otherUserSessionName=omimPhenotypeTableBrowserEx19"> this session link</a>.