8d2d04a5414fc413cdf188edfa3e9ee26a597d79
hiram
  Wed Jul 29 13:36:49 2020 -0700
Added canFam5 dog; refs #25917

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index fe4d346..12fc8a9 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -3197,30 +3197,48 @@
 canFam4.lift = /hive/data/genomes/canFam4/jkStuff/canFam4.nonBridged.lft
 canFam4.align.unplacedChroms = chrUn_*
 canFam4.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 canFam4.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 canFam4.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 canFam4.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 canFam4.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 canFam4.refseq.mrna.native.load = yes
 canFam4.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 canFam4.genbank.mrna.xeno.load = yes
 canFam4.downloadDir = canFam4
 canFam4.upstreamGeneTbl = refGene
 canFam4.perChromTables = no
 
+# canFam5 (Great Dane - GCA_005444595.1 - UMICH_Zoey_3.1) 
+canFam5.serverGenome = /hive/data/genomes/canFam5/canFam5.2bit
+canFam5.ooc = /hive/data/genomes/canFam5/jkStuff/canFam5.11.ooc
+canFam5.lift = /hive/data/genomes/canFam5/jkStuff/canFam5.10Kgaps.lft
+canFam5.align.unplacedChroms = chrUn_*
+canFam5.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+canFam5.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+canFam5.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+canFam5.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+canFam5.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+canFam5.refseq.mrna.native.load = yes
+canFam5.refseq.mrna.xeno.load = yes
+# DO NOT NEED genbank.mrna.xeno except for human, mouse
+canFam5.genbank.mrna.xeno.load = yes
+canFam5.downloadDir = canFam5
+canFam5.upstreamGeneTbl = refGene
+canFam5.perChromTables = no
+
 # ailMel1 (panda)
 ailMel1.serverGenome = /hive/data/genomes/ailMel1/ailMel1.2bit
 ailMel1.lift = no
 ailMel1.ooc = /hive/data/genomes/ailMel1/ailMel1.11.ooc
 ailMel1.refseq.mrna.native.pslCDnaFilter  = ${lowCover.refseq.mrna.native.pslCDnaFilter}
 ailMel1.refseq.mrna.xeno.pslCDnaFilter    = ${lowCover.refseq.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.mrna.native.pslCDnaFilter = ${lowCover.genbank.mrna.native.pslCDnaFilter}
 ailMel1.genbank.mrna.xeno.pslCDnaFilter   = ${lowCover.genbank.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.est.native.pslCDnaFilter  = ${lowCover.genbank.est.native.pslCDnaFilter}
 ailMel1.refseq.mrna.native.load = no
 ailMel1.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 ailMel1.genbank.mrna.xeno.load = yes
 ailMel1.downloadDir = ailMel1
 ailMel1.perChromTables = no