b4dc79691dba0b82c4253ce9bc9baeb1ce2156fe hiram Fri Jul 31 12:37:27 2020 -0700 Added canFam5 dog; refs #25917 diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf index e478bf9..af945b1 100644 --- src/hg/makeDb/genbank/etc/genbank.conf +++ src/hg/makeDb/genbank/etc/genbank.conf @@ -3220,31 +3220,31 @@ canFam4.refseq.mrna.xeno.pslCDnaFilter = ${finished.refseq.mrna.xeno.pslCDnaFilter} canFam4.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter} canFam4.genbank.mrna.xeno.pslCDnaFilter = ${finished.genbank.mrna.xeno.pslCDnaFilter} canFam4.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter} canFam4.refseq.mrna.native.load = yes canFam4.refseq.mrna.xeno.load = yes # DO NOT NEED genbank.mrna.xeno except for human, mouse canFam4.genbank.mrna.xeno.load = yes canFam4.downloadDir = canFam4 canFam4.upstreamGeneTbl = refGene canFam4.perChromTables = no # canFam5 (Great Dane - GCA_005444595.1 - UMICH_Zoey_3.1) canFam5.serverGenome = /hive/data/genomes/canFam5/canFam5.2bit canFam5.ooc = /hive/data/genomes/canFam5/jkStuff/canFam5.11.ooc -canFam5.lift = /hive/data/genomes/canFam5/jkStuff/canFam5.10Kgaps.lft +canFam5.lift = /hive/data/genomes/canFam5/jkStuff/canFam5.5Kgaps.lft canFam5.align.unplacedChroms = chrUn_* canFam5.refseq.mrna.native.pslCDnaFilter = ${finished.refseq.mrna.native.pslCDnaFilter} canFam5.refseq.mrna.xeno.pslCDnaFilter = ${finished.refseq.mrna.xeno.pslCDnaFilter} canFam5.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter} canFam5.genbank.mrna.xeno.pslCDnaFilter = ${finished.genbank.mrna.xeno.pslCDnaFilter} canFam5.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter} canFam5.refseq.mrna.native.load = yes canFam5.refseq.mrna.xeno.load = yes # DO NOT NEED genbank.mrna.xeno except for human, mouse canFam5.genbank.mrna.xeno.load = yes canFam5.downloadDir = canFam5 canFam5.upstreamGeneTbl = refGene canFam5.perChromTables = no # ailMel1 (panda)