ba89366e6b1e0c1eb357a9d67bf978fa59612ffc
hiram
  Thu Jul 30 10:04:35 2020 -0700
Added mm39 mouse; refs #22271

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 12fc8a9..e478bf9 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -608,30 +608,50 @@
 GRCm38B.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 GRCm38B.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 GRCm38B.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 GRCm38B.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 GRCm38B.downloadDir = GRCm38B
 GRCm38B.refseq.mrna.xeno.load  = yes
 GRCm38B.refseq.mrna.xeno.loadDesc = yes
 GRCm38B.genbank.mrna.xeno.load  = yes
 #GRCm38B.mgc = yes
 #GRCm38B.orfeome = yes
 #GRCm38B.ccds.buildId = 21
 #GRCm38B.genbank.mrna.blatTargetDb = yes
 # GRCm38B.upstreamGeneTbl = refGene
 # GRCm38B.upstreamMaf = multiz60way /hive/data/genomes/GRCm38B/bed/multiz60way/species.list
 
+# mm39 - (house mouse - GCA_000001635.9 - GRCm39)
+mm39.serverGenome = /hive/data/genomes/mm39/mm39.2bit
+mm39.ooc = /hive/data/genomes/mm39/jkStuff/mm39.11.ooc
+mm39.lift = /hive/data/genomes/mm39/jkStuff/mm39.5Kgaps.lft
+mm39.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+mm39.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+mm39.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+mm39.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+mm39.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+mm39.downloadDir = mm39
+mm39.refseq.mrna.xeno.load  = yes
+mm39.refseq.mrna.xeno.loadDesc = yes
+mm39.genbank.mrna.xeno.load  = yes
+mm39.genbank.mrna.blatTargetDb = yes
+mm39.upstreamGeneTbl = refGene
+# mm39.mgc = yes
+# mm39.orfeome = yes
+# mm39.ccds.buildId = 21
+# mm39.upstreamMaf = multiz60way /hive/data/genomes/mm39/bed/multiz60way/species.list
+
 # mm10
 mm10.serverGenome = /hive/data/genomes/mm10/mm10.2bit
 mm10.ooc = /hive/data/genomes/mm10/mm10.11.ooc
 mm10.lift = /hive/data/genomes/mm10/mm10.nonBridged.lift
 mm10.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 mm10.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 mm10.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 mm10.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 mm10.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 mm10.downloadDir = mm10
 mm10.refseq.mrna.xeno.load  = yes
 mm10.refseq.mrna.xeno.loadDesc = yes
 mm10.genbank.mrna.xeno.load  = yes
 mm10.mgc = yes
 mm10.orfeome = yes