553e456f9d78c07964df4c42af62d7480b7a55a6
braney
  Wed Jul 15 08:30:40 2020 -0700
oops... a place I missed that references gff.h.

diff --git src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
index 52ef621..98d857c 100644
--- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
+++ src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
@@ -361,31 +361,31 @@
 
 /* Convert it to a somewhat smaller less informative bed file for sampling purposes. */
 char sampleFileName[PATH_LEN], temp[PATH_LEN];
 safef(sampleFileName, PATH_LEN, "%sedwGffBedXXXXXX", edwTempDirForToday(temp));
 int sampleFd = makeReadableTemp(sampleFileName);
 FILE *f = fdopen(sampleFd, "w");
 struct genomeRangeTree *grt = genomeRangeTreeNew();
 
 /* Loop through lines writing out simple bed and adding to genome range tree. */
 struct gffLine *gffLine;
 long long itemCount = 0;
 long long totalSize = 0;
 for (gffLine = gff->lineList; gffLine != NULL; gffLine = gffLine->next)
     {
     totalSize += gffLine->end - gffLine->start;
-    fprintf(f, "%s\t%d\t%d\n", gffLine->seq, gffLine->start, gffLine->end);
+    fprintf(f, "%s\t%ld\t%ld\n", gffLine->seq, gffLine->start, gffLine->end);
     genomeRangeTreeAdd(grt, gffLine->seq, gffLine->start, gffLine->end);
     ++itemCount;
     }
 carefulClose(&f);
 
 /* Fill out what we can of vf with info we've gathered. */
 vf->itemCount = vf->sampleCount = itemCount;
 vf->basesInItems = vf->basesInSample = totalSize;
 vf->sampleBed = cloneString(sampleFileName);
 long long basesHitBySample = genomeRangeTreeSumRanges(grt);
 genomeRangeTreeFree(&grt);
 vf->sampleCoverage = (double)basesHitBySample/assembly->baseCount;
 vf->mapRatio = 1.0;
 vf->depth = (double)totalSize/assembly->baseCount;
 gffFileFree(&gff);