11a82397d8d5c6d013cc62cdc99b84bc5506747e braney Fri Jul 17 12:55:23 2020 -0700 ongoing work on the GENCODE merge diff --git src/hg/inc/hdb.h src/hg/inc/hdb.h index b8b53cf..d6eaa09 100644 --- src/hg/inc/hdb.h +++ src/hg/inc/hdb.h @@ -1044,16 +1044,21 @@ char *hFindLatestGencodeTableConn(struct sqlConnection *conn, char *suffix); /* Return the 'wgEncodeGencode<suffix>V<version>' table with the highest version number, if any. * If suffix is NULL, it defaults to Basic. */ boolean hDbHasNcbiRefSeq(char *db); /* Return TRUE if db has NCBI's RefSeq alignments and annotations. */ char *hRefSeqAccForChrom(char *db, char *chrom); /* Return the RefSeq NC_000... accession for chrom if we can find it, else just chrom. * db must never change. */ boolean isMito(char *chrom); /* Return True if chrom is chrM or chrMT */ +char *hdbDefaultKnownDb(char *db); +/* Get the default knownGene database from the defaultKnown table. */ + +char *hdbGetMasterGeneTrack(char *knownDb); +/* Get the native gene track for a knownGene database. */ #endif /* HDB_H */