944206877334ce5b5c47175110ffbabee88ae831 chmalee Thu Jul 16 12:01:34 2020 -0700 Rename 'vcfNo' trackDb variables to 'vcfDo' so code is more clear, refs Angie email diff --git src/hg/inc/vcfUi.h src/hg/inc/vcfUi.h index f36ccc7..785dded 100644 --- src/hg/inc/vcfUi.h +++ src/hg/inc/vcfUi.h @@ -25,39 +25,39 @@ #define VCF_HAP_COLORBY_FUNCTION "function" #define VCF_HAP_COLORBY_REFALT "refAlt" #define VCF_HAP_COLORBY_BASE "base" #define VCF_DEFAULT_HAP_COLORBY VCF_HAP_COLORBY_ALTONLY #define VCF_HAP_TREEANGLE_VAR "hapClusterTreeAngle" #define VCF_HAP_TREEANGLE_TRIANGLE "triangle" #define VCF_HAP_TREEANGLE_RECTANGLE "rectangle" #define VCF_DEFAULT_HAP_TREEANGLE VCF_HAP_TREEANGLE_TRIANGLE #define VCF_SHOW_HW_VAR "showHardyWeinberg" #define VCF_APPLY_MIN_QUAL_VAR "applyMinQual" #define VCF_DEFAULT_APPLY_MIN_QUAL FALSE -#define VCF_DO_QUAL_UI "vcfNoQual" +#define VCF_DO_QUAL_UI "vcfDoQual" #define VCF_MIN_QUAL_VAR "minQual" #define VCF_DEFAULT_MIN_QUAL 0 -#define VCF_DO_FILTER_UI "vcfNoFilter" +#define VCF_DO_FILTER_UI "vcfDoFilter" #define VCF_EXCLUDE_FILTER_VAR "excludeFilterValues" -#define VCF_DO_MAF_UI "vcfNoMaf" +#define VCF_DO_MAF_UI "vcfDoMaf" #define VCF_MIN_ALLELE_FREQ_VAR "minFreq" #define VCF_DEFAULT_MIN_ALLELE_FREQ 0.0 #define VCF_PHASED_CHILD_SAMPLE_SETTING "vcfChildSample" #define VCF_PHASED_PARENTS_SAMPLE_SETTING "vcfParentSamples" #define VCF_PHASED_SAMPLE_ORDER_VAR "vcfSampleOrder" #define VCF_PHASED_MAX_OTHER_SAMPLES 2 #define VCF_PHASED_DEFAULT_LABEL_VAR "doDefaultLabel" #define VCF_PHASED_ALIAS_LABEL_VAR "doAliasLabel" #define VCF_PHASED_HIDE_OTHER_VAR "hideParents" #define VCF_PHASED_TDB_USE_ALT_NAMES "vcfUseAltSampleNames" #define VCF_PHASED_HIGHLIGHT_INCONSISTENT "vcfHighlightDiffs" #define VCF_PHASED_CHILD_BELOW_VAR "sortChildBelow" void vcfCfgHaplotypeCenter(struct cart *cart, struct trackDb *tdb, char *track,