Genomic locations of ClinVar variants are labeled with the ClinVar variant descriptions. All information related to each is variant is shown on that variant's details page. Leave the mouse over a feature for more than 2 seconds to show the clinical significance of a variant.
The track is divided into two subtracks, one for copy number variants (CNVs), which are all variants longer than 50bp, and a second track for shorter substitutions and indels.
Until October 2017, all variants with the ClinVar types copy number gain/loss and DbVar "nsv" accessions were put in the CNV category. Due -to the ClinVar type not capturing this information anymore, anything longer +to the ClinVar type lon longer capturing this information, anything longer than 50bp is now considered a CNV.
Entries in the ClinVar CNV track are colored red for loss and blue for gain.
Entries in the ClinVar short variants track are shaded by clinical annotation: red for pathogenic, dark grey for uncertain significance or not provided and dark blue for variant of uncertain significance and light blue for conflicting and green for benign.