f052d1d18ea9b1505ef33525620e58a3153104e5 kuhn Tue Jul 21 13:54:00 2020 -0700 reworded a sentence diff --git src/hg/makeDb/trackDb/human/clinvar.html src/hg/makeDb/trackDb/human/clinvar.html index 96e6dd5..4d76664 100644 --- src/hg/makeDb/trackDb/human/clinvar.html +++ src/hg/makeDb/trackDb/human/clinvar.html @@ -29,31 +29,31 @@ <h2>Display Conventions and Configuration</h2> <p> Genomic locations of ClinVar variants are labeled with the ClinVar variant descriptions. All information related to each is variant is shown on that variant's details page. Leave the mouse over a feature for more than 2 seconds to show the clinical significance of a variant. </p> <p>The track is divided into two subtracks, one for copy number variants (CNVs), which are all variants longer than 50bp, and a second track for shorter substitutions and indels.</p> <p> Until October 2017, all variants with the ClinVar types copy number gain/loss and DbVar "nsv" accessions were put in the CNV category. Due -to the ClinVar type not capturing this information anymore, anything longer +to the ClinVar type lon longer capturing this information, anything longer than 50bp is now considered a CNV.</p> <p> Entries in the ClinVar CNV track are colored <b><font color="red">red for loss</font></b> and <B><font color="blue">blue for gain</font></b>. </p> <p> Entries in the ClinVar short variants track are shaded by clinical annotation: <b><font color="red">red for pathogenic</font></b>, <B><font color="#888">dark grey for uncertain significance or not provided</font></b> and <B><font color="#000088">dark blue for variant of uncertain significance</font></b> and <B><font color="#ADD8E6">light blue for conflicting</font></b> and <B><font color="green">green for benign</font></b>.