347cd39dde8e7bac935c2858e2418601a9baf5a9 lrnassar Mon Jul 20 13:58:52 2020 -0700 Adding back a plug to the blog to #download36 refs #25775 diff --git src/hg/htdocs/FAQ/FAQdownloads.html src/hg/htdocs/FAQ/FAQdownloads.html index 3e1ca8e..60e9e1b 100755 --- src/hg/htdocs/FAQ/FAQdownloads.html +++ src/hg/htdocs/FAQ/FAQdownloads.html @@ -891,30 +891,35 @@ for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range using one of the hgdownload servers, example:</p> <ul> <li> North American server: <pre><code>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/path/to/file/bigBedfile.bb -chrom=chr21 -start=0 -end=1000000 stdout </code></pre> </li> <li> European server: <pre><code>bigBedToBed http://hgdownload-euro.soe.ucsc.edu/gbdb/path/to/file/bigBedfile.bb -chrom=chr21 -start=0 -end=1000000 stdout </code></pre> </li> </ul> <p> +Read more in <a href="http://genome.ucsc.edu/blog/"> our blog</a> about +<a href="http://genome.ucsc.edu/blog/?s=programmatic">Accessing the Genome Browser Programmatically</a> +to acquire data. +</p> +<p> <a name="snp"></a> <h2>How do I download dbSNP data?</h2> <p> For versions dbSNP153 and above, the data is formatted in bigBed files. Previous versions are MySQL tables. For help with versions before dbSNP153, see <a href="#download29">accessing MySQL data</a>. This FAQ entry pertains to versions dbSNP153 and above.</p> <p> Since dbSNP has grown to include over 700 million variants, the size of the All dbSNP (153+) subtrack can cause the <a href="/cgi-bin/hgTables" target=_blank>Table Browser</a> and <a href="/cgi-bin/hgIntegrator" target=_blank>Data Integrator</a> to time out, leading to a blank page or truncated output, unless queries are restricted to a chromosomal region or to a specific set of rs# IDs (which can be pasted/uploaded into the Table Browser), or to one of the subset tracks such as Common or ClinVar.