57ea2b9e93735c2cff66d3f4bd66d024636c7b83
lrnassar
  Fri Jul 24 11:33:51 2020 -0700
RefSeq Diff track set refs #22586

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--- src/hg/htdocs/goldenPath/newsarch.html
+++ src/hg/htdocs/goldenPath/newsarch.html
@@ -39,30 +39,157 @@
     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2020 archived news ============= -->
 <a name="2020"></a>
+<a name="072420"></a>
+<h2>Jul. 24, 2020 &nbsp;&nbsp; New RefSeq Diffs tracks on 54 assemblies</h2>
+<p>
+We have generated RefSeq Diffs tracks for 54 new assemblies. These tracks
+show alignment differences between the reference genome and RefSeq transcripts.
+This track can be found as part of the NCBI RefSeq composite track. Click the 
+assembly links below to go to the respective assembly RefSeq composite page:</p><br>
+<div class="container">
+  <div class="row">
+  <div class="col-sm-4">
+  <ul>
+        <li>African clawed frog <a href="../cgi-bin/hgTrackUi?db=xenLae2&g=refSeqComposite"
+         target=_blank>(xenLae2)</a></li>
+        <li>Armadillo <a href="../cgi-bin/hgTrackUi?db=dasNov3&g=refSeqComposite"
+         target=_blank>(dasNov3)</a></li>
+        <li>Baboon <a href="../cgi-bin/hgTrackUi?db=papAnu4&g=refSeqComposite"
+         target=_blank>(papAnu4)</a></li>
+        <li>Bonobo <a href="../cgi-bin/hgTrackUi?db=panPan2&g=refSeqComposite"
+         target=_blank>(panPan2)</a></li>
+        <li>Budgerigar <a href="../cgi-bin/hgTrackUi?db=melUnd1&g=refSeqComposite"
+         target=_blank>(melUnd1)</a></li>
+        <li>Bushbaby <a href="../cgi-bin/hgTrackUi?db=otoGar3&g=refSeqComposite"
+         target=_blank>(otoGar3)</a></li>
+        <li>C. elegans <a href="../cgi-bin/hgTrackUi?db=ce11&g=refSeqComposite"
+         target=_blank>(ce11)</a></li>
+        <li>Cat <a href="../cgi-bin/hgTrackUi?db=felCat9&g=refSeqComposite"
+         target=_blank>(felCat9)</a></li>
+        <li>Chicken <a href="../cgi-bin/hgTrackUi?db=galGal6&g=refSeqComposite"
+         target=_blank>(galGal6)</a></li>
+        <li>Chimp <a href="../cgi-bin/hgTrackUi?db=panTro6&g=refSeqComposite"
+         target=_blank>(panTro6)</a></li>
+        <li>Chinese hamster <a href="../cgi-bin/hgTrackUi?db=criGriChoV1&g=refSeqComposite"
+         target=_blank>(criGriChoV1)</a></li>
+        <li>Coelacanth <a href="../cgi-bin/hgTrackUi?db=latCha1&g=refSeqComposite"
+         target=_blank>(latCha1)</a></li>
+        <li>Cow <a href="../cgi-bin/hgTrackUi?db=bosTau9&g=refSeqComposite"
+         target=_blank>(bosTau9)</a></li>
+        <li>Crab-eating macaque <a href="../cgi-bin/hgTrackUi?db=macFas5&g=refSeqComposite"
+         target=_blank>(macFas5)</a></li>
+        <li>D. melanogaster <a href="../cgi-bin/hgTrackUi?db=dm6&g=refSeqComposite"
+         target=_blank>(dm6)</a></li>
+        <li>Dog <a href="../cgi-bin/hgTrackUi?db=canFam3&g=refSeqComposite"
+         target=_blank>(canFam3)</a></li>
+        <li>Elephant <a href="../cgi-bin/hgTrackUi?db=loxAfr3&g=refSeqComposite"
+         target=_blank>(loxAfr3)</a></li>
+  </ul></div>
+  <div class="col-sm-4">
+  <ul>
+        <li>Elephant shark <a href="../cgi-bin/hgTrackUi?db=calMil1&g=refSeqComposite"
+         target=_blank>(calMil1)</a></li>
+        <li>Ferret <a href="../cgi-bin/hgTrackUi?db=musFur1&g=refSeqComposite"
+         target=_blank>(musFur1)</a></li>
+        <li>Garter snake <a href="../cgi-bin/hgTrackUi?db=thaSir1&g=refSeqComposite"
+         target=_blank>(thaSir1)</a></li>
+        <li>Guinea pig <a href="../cgi-bin/hgTrackUi?db=cavPor3&g=refSeqComposite"
+         target=_blank>(cavPor3)</a></li>
+        <li>Hedgehog <a href="../cgi-bin/hgTrackUi?db=eriEur2&g=refSeqComposite"
+         target=_blank>(eriEur2)</a></li>
+        <li>Horse <a href="../cgi-bin/hgTrackUi?db=equCab3&g=refSeqComposite"
+         target=_blank>(equCab3)</a></li>
+        <li>Human <a href="../cgi-bin/hgTrackUi?db=hg19&g=refSeqComposite"
+         target=_blank>(hg19)</a></li>
+        <li>Lizard <a href="../cgi-bin/hgTrackUi?db=anoCar2&g=refSeqComposite"
+         target=_blank>(anoCar2)</a></li>
+        <li>Malayan flying lemur <a href="../cgi-bin/hgTrackUi?db=galVar1&g=refSeqComposite"
+         target=_blank>(galVar1)</a></li>
+        <li>Manatee <a href="../cgi-bin/hgTrackUi?db=triMan1&g=refSeqComposite"
+         target=_blank>(triMan1)</a></li>
+        <li>Marmoset <a href="../cgi-bin/hgTrackUi?db=calJac3&g=refSeqComposite"
+         target=_blank>(calJac3)</a></li>
+        <li>Medium ground finch <a href="../cgi-bin/hgTrackUi?db=geoFor1&g=refSeqComposite"
+         target=_blank>(geoFor1)</a></li>
+        <li>Microbat <a href="../cgi-bin/hgTrackUi?db=myoLuc2&g=refSeqComposite"
+         target=_blank>(myoLuc2)</a></li>
+        <li>Minke whale <a href="../cgi-bin/hgTrackUi?db=balAcu1&g=refSeqComposite"
+         target=_blank>(balAcu1)</a></li>
+        <li>Mouse <a href="../cgi-bin/hgTrackUi?db=mm10&g=refSeqComposite"
+         target=_blank>(mm10)</a></li>
+        <li>Naked mole-rat <a href="../cgi-bin/hgTrackUi?db=hetGla2&g=refSeqComposite"
+         target=_blank>(hetGla2)</a></li>
+        <li>Orangutan <a href="../cgi-bin/hgTrackUi?db=ponAbe3&g=refSeqComposite"
+         target=_blank>(ponAbe3)</a></li>
+  </ul></div>
+  <div class="col-sm-4">
+  <ul>
+        <li>Panda <a href="../cgi-bin/hgTrackUi?db=ailMel1&g=refSeqComposite"
+         target=_blank>(ailMel1)</a></li>
+        <li>Pika <a href="../cgi-bin/hgTrackUi?db=ochPri3&g=refSeqComposite"
+         target=_blank>(ochPri3)</a></li>
+        <li>Rabbit <a href="../cgi-bin/hgTrackUi?db=oryCun2&g=refSeqComposite"
+         target=_blank>(oryCun2)</a></li>
+        <li>Rat <a href="../cgi-bin/hgTrackUi?db=rn6&g=refSeqComposite"
+         target=_blank>(rn6)</a></li>
+        <li>S. cerevisiae <a href="../cgi-bin/hgTrackUi?db=sacCer3&g=refSeqComposite"
+         target=_blank>(sacCer3)</a></li>
+        <li>Sheep <a href="../cgi-bin/hgTrackUi?db=oviAri4&g=refSeqComposite"
+         target=_blank>(oviAri4)</a></li>
+        <li>Shrew <a href="../cgi-bin/hgTrackUi?db=sorAra2&g=refSeqComposite"
+         target=_blank>(sorAra2)</a></li>
+        <li>Squirrel <a href="../cgi-bin/hgTrackUi?db=speTri2&g=refSeqComposite"
+         target=_blank>(speTri2)</a></li>
+        <li>Squirrel monkey <a href="../cgi-bin/hgTrackUi?db=saiBol1&g=refSeqComposite"
+         target=_blank>(saiBol1)</a></li>
+        <li>Tarsier <a href="../cgi-bin/hgTrackUi?db=tarSyr2&g=refSeqComposite"
+         target=_blank>(tarSyr2)</a></li>
+        <li>Tasmanian devil <a href="../cgi-bin/hgTrackUi?db=sarHar1&g=refSeqComposite"
+         target=_blank>(sarHar1)</a></li>
+        <li>Tibetan frog <a href="../cgi-bin/hgTrackUi?db=nanPar1&g=refSeqComposite"
+         target=_blank>(nanPar1)</a></li>
+        <li>White rhinoceros <a href="../cgi-bin/hgTrackUi?db=cerSim1&g=refSeqComposite"
+         target=_blank>(cerSim1)</a></li>
+        <li>X. tropicalis <a href="../cgi-bin/hgTrackUi?db=xenTro7&g=refSeqComposite"
+         target=_blank>(xenTro7)</a></li>
+        <li>X. tropicalis <a href="../cgi-bin/hgTrackUi?db=xenTro9&g=refSeqComposite"
+         target=_blank>(xenTro9)</a></li>
+        <li>Zebrafish <a href="../cgi-bin/hgTrackUi?db=danRer10&g=refSeqComposite"
+         target=_blank>(danRer10)</a></li>
+        <li>Zebrafish <a href="../cgi-bin/hgTrackUi?db=danRer11&g=refSeqComposite"
+         target=_blank>(danRer11)</a></li>
+  </ul></div>
+</div></div>
+
+<p>
+Thanks to <a target="_blank" href="https://www.ncbi.nlm.nih.gov/refseq/">
+NCBI RefSeq</a> for providing the RefSeq annotations, as well as Hiram Clawson
+and Lou Nassar of the UCSC Genome Browser group for their
+work in creating and releasing these tracks.</p>
 
 <a name="071020"></a>
 <h2>Jul. 10, 2020 &nbsp;&nbsp; New Genome Browsers: Dog (canFam4) and Bonobo (panPan3)</h2>
 <p>
 Genome browsers are now available for the <em>Canis lupus familiaris</em> assembly released 
 in March 2020 by <a href="https://www.uu.se/en" target="_blank">Uppsala University</a> 
 (UU_Cfam_GSD_1.0), and the <em>Pan paniscus</em> assembly released in May 2020 by the 
 <a href="https://www.washington.edu/" target="_blank">University of Washington</a> 
 (Mhudiblu_PPA_v0).</p>
 <h3>About the assembly (canFam4):</h3>
 <ul>
   <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=canFam4" 
   target="_blank">canFam4</a></li>
   <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.uu.se/en">
 Uppsala University</a></li>