Commits for max

v402_preview to v402_preview2 (2020-07-20 to 2020-07-27) v402

48de4e2ccfe829cfea8c38d9f1034aa217b04cf1 Mon Jul 20 10:57:49 2020 -0700

• Revert "fixing PDF output for new highlight cart variable format, also fixes a related problem that just came up on the ML, refs #25887" This reverts commit fb06bed25a9f45eaef8a875f3efbd45cfc14e804.
  • src/hg/hgTracks/hgTracks.c - lines changed 46, context: html, text, full: html, text

350733c85caaaebfe5c82892e57a38d60e70c1c3 Mon Jul 20 11:23:01 2020 -0700

• fixing a previous commit that I had reverted, refs #25887. Code review note: ignore the original commit and its reverted cousin This is the only relevant commit.
  • src/hg/hgTracks/hgTracks.c - lines changed 36, context: html, text, full: html, text

ee211bfbeedc99ca157c71ba3ba04ae6346b263b Tue Jul 21 02:11:14 2020 -0700

• support the super old chrom:start-end syntax again (found by Jonathan), adding back possibility to have higlights on two different dbs by removing check for db-prefix in hgTracks (the db-filtering is done by the javascript code anyways) and clean up the code a little by introducing a function that creates the highlight string from the parts instead of copied code. refs #21384
  • src/hg/hgTracks/hgTracks.c - lines changed 9, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 3, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 13, context: html, text, full: html, text

ec91666fb5afb7d8d6410fa2be4da5aaca2f8505 Tue Jul 21 05:04:05 2020 -0700

• adding wuhCor1 contacts track docs page, refs #25910
  • src/hg/makeDb/trackDb/virus/wuhCor1/contacts.html - lines changed 22, context: html, text, full: html, text

700f17522f59d037cffe5a6f5a505eb313a965a3 Tue Jul 21 05:16:28 2020 -0700

• adding makedocs and fixes to track docs for contact wuhCor1 tracks, refs #25910
  • src/hg/makeDb/doc/wuhCor1/contacts.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/contacts.html - lines changed 6, context: html, text, full: html, text

71d44a6ae7734144cfbe0fb42f06483ed023f401 Wed Jul 22 06:12:10 2020 -0700

• updating contacts track on wuhCor1, refs #25910
  • src/hg/makeDb/trackDb/virus/wuhCor1/contacts.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text

bd7a05523fb883ccaa2fa7cce4e380522105c3a0 Thu Jul 23 01:40:46 2020 -0700

• adding icshape wuhCor1 track, refs #25942
  • src/hg/makeDb/doc/wuhCor1/icshape.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 32, context: html, text, full: html, text

11dcee554fb49f7631db7d34371ff9a241943ab1 Fri Jul 24 02:21:30 2020 -0700

• adding phyloCsf genes to wuhCor1, refs #25946
  • src/hg/makeDb/doc/wuhCor1/phyloGenes.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/phyloGenes.html - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 33, context: html, text, full: html, text

9c8d34bb08cf622ee058537ff3680a3f04775145 Fri Jul 24 05:02:21 2020 -0700

• fixing msdos line endings in track docs file, found by nightly build, refs #25946
  • src/hg/makeDb/trackDb/virus/wuhCor1/phyloGenes.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

6667aa55ce0d46a79d174f04288e78660a4f1b60 Fri Jul 24 06:29:58 2020 -0700

• adding natural selection (pond) track to wuhCor1, refs #25947
  • src/hg/makeDb/doc/wuhCor1/pond.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pond.html - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pond.ra - lines changed 108, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text