768289e6cf447f433a89c75856d60a3b018b53aa
braney
  Thu Aug 20 11:00:29 2020 -0700
add trackDb variables to allow the composite parent to forego the
settings of the first track, and to show the configuration of a subtrack
by default

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
index b4d2dc3..9c59d46 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
@@ -1,35 +1,37 @@
 track clinvar
 compositeTrack on
 shortLabel ClinVar Variants
 longLabel ClinVar Variants
 group phenDis
 visibility hide
 type bed 12 +
+noParentConfig on
 itemRgb on
 urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
 scoreLabel ClinVar Star-Rating (0-4)
 
         track clinvarMain
         parent clinvar
         shortLabel ClinVar SNVs
         longLabel ClinVar Short Variants < 50bp
         visibility hide
         group phenDis
         itemRgb on
         priority 1
         type bigBed 12 +
+        showCfg on
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSignCode singleList
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
         filterType._originCode singleList
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode SNV|single nucleotide variant - SNV,INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
         filterType._allTypeCode singleList
         filter._varLen 0
         filterByRange._varLen on
         filterLimits._varLen 0:49
         filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on