fb00da5974d75ff6cb2ebbce5ad7f2a072a5ec8d braney Thu Aug 20 09:18:01 2020 -0700 remove dependency on hgNearData, which is release controlled diff --git src/hg/near/hgNear/hgNear.c src/hg/near/hgNear/hgNear.c index f9351b5..a51ffcc 100644 --- src/hg/near/hgNear/hgNear.c +++ src/hg/near/hgNear/hgNear.c @@ -1885,35 +1885,32 @@ if (hIsBrowserbox()) { printf("The Gene Sorter is not supported on the Genome Browser in a Box Virtual Machine.<p>"); printf("Please use this tool on the <a href=\"http://genome.ucsc.edu/cgi-bin/hgNear\">UCSC website</a><p>"); return; } char *var = NULL; struct sqlConnection *conn; struct column *colList, *col; cart = theCart; getDbAndGenome(cart, &database, &genome, oldVars); makeSureDbHasHgNear(); getGenomeSettings(); -char *externalDb = genomeOptionalSetting("externalDb"); -if (externalDb == NULL) - conn = hAllocConn(database); -else - conn = hAllocConn(externalDb); +char *knownDb = hdbDefaultKnownDb(database); +conn = hAllocConn(knownDb); /* if kgProtMap2 table exists, this means we are doing KG III */ if (hTableExists(database, "kgProtMap2")) kgVersion = KG_III; /* Get groupOn. Revert to default if no advanced filter. */ groupOn = cartUsualString(cart, groupVarName, "expression"); displayCountString = cartUsualString(cart, countVarName, "50"); if (sameString(displayCountString, "all")) displayCount = BIGNUM; else displayCount = atoi(displayCountString); colList = getColumns(conn); /* Main dispatch logic on near.do.XXXX */