102ab1cb5a7f8f8b1ed1197e69b204f340252501
hiram
  Tue Aug 18 08:58:37 2020 -0700
adding mm39 chainNet definition refs #22271

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
index 453af8a..50e762c 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
@@ -1,16 +1,70 @@
 ##############################################################################
+# mm39 - mouse - Mus musculus - taxId: 10090
+##############################################################################
+track chainNetMm39
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 370.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb mm39
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainNetMm39Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetMm39
+    spectrum on
+
+        track chainMm39
+        parent chainNetMm39Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain mm39
+        html chainNet
+
+    track chainNetMm39Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetMm39
+
+        track netMm39
+        parent chainNetMm39Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign mm39 chainMm39
+        html chainNet
+
+##############################################################################
 # fukDam1 - Damara mole rat - Fukomys damarensis - taxId: 885580
 ##############################################################################
 track chainNetFukDam1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 322.80
 color 0,0,0
 altColor 100,50,0
 type bed 3