fbf1a3a1fac7fdd4ad7bd169e966fe28c9a01f7f
hiram
  Tue Aug 18 09:08:22 2020 -0700
adding canFam5 definitions refs #25917

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
index 5b2499e..218a038 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
@@ -312,30 +312,85 @@
     track chainNetCriGriChoV2Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetCriGriChoV2
 
         track netCriGriChoV2
         parent chainNetCriGriChoV2Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign criGriChoV2 chainCriGriChoV2
         html chainNet
 
 ################################################################
+# canFam5 - dog - Canis lupus familiaris - mammal - 9615
+# Great dane 'Zoey'
+################################################################
+track chainNetCanFam5
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 240
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb canFam5
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainNetCanFam5Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetCanFam5
+    spectrum on
+
+        track chainCanFam5
+        parent chainNetCanFam5Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain canFam5
+        html chainNet
+
+    track chainNetCanFam5Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetCanFam5
+
+        track netCanFam5
+        parent chainNetCanFam5Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign canFam5 chainCanFam5
+        html chainNet
+
+################################################################
 # canFam4 - dog - Canis lupus familiaris - mammal - 9615
 # German shepard 'Mischka'
 ################################################################
 track chainNetCanFam4
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240
 color 0,0,0
 altColor 100,50,0