e6cd18ccbe6e255de8cb54bc70da0e42fe9a73b5
markd
  Mon Aug 17 19:17:10 2020 -0700
add report of location of frameshifts for use by CAT

diff --git src/hg/inc/genePred.h src/hg/inc/genePred.h
index cf62880..f5a896d 100644
--- src/hg/inc/genePred.h
+++ src/hg/inc/genePred.h
@@ -287,31 +287,30 @@
  * this overrides the biggest overlap */
 
 int genePredBases(struct genePred *gp);
 /* count coding and utr bases in a gene prediction */
 
 int genePredCodingBases(struct genePred *gp);
 /* Count up the number of coding bases in gene prediction. */
 
 INLINE int genePredCdsSize(struct genePred *gp)
 /* Count up the number of coding bases in gene prediction.
  * This function is redundant. */
 {
 return genePredCodingBases(gp);
 }
 
-
 boolean genePredCdsExon(struct genePred *gp, int iExon, int *startPtr, int *endPtr);
 /* Get the CDS range in an exon.  If there is no CDS, return FALSE and then
  * set start == end */
 
 int genePredCheck(char *desc, FILE* errFh, int chromSize, 
                   struct genePred* gp);
 /* Validate a genePred for consistency.  desc is printed the error messages
  * to file errFh (open /dev/null to discard).  chromSize should contain
  * size of chromosome, or 0 if chrom is not valid, or -1 to not check
  * chromosome bounds. Returns count of errors. */
 
 int genePredCheckDb(char *desc, FILE* errFh, char* db, struct genePred* gp);
 /* Validate a genePred for consistency.  desc is printed the error messages
  * to file errFh (open /dev/null to discard).  Lookup chromosome size in database if
  * db is not NULL. Returns count of errors. */