56e876a710840529715cd8a5496f46e3e9d372cb
max
  Fri Aug 21 03:57:10 2020 -0700
fixing general usage problems with chromToUcsc found by Matt, refs

diff --git src/utils/chromToUcsc/tests/makefile src/utils/chromToUcsc/tests/makefile
index c20150c..6d6c431 100644
--- src/utils/chromToUcsc/tests/makefile
+++ src/utils/chromToUcsc/tests/makefile
@@ -1,18 +1,20 @@
 kentSrc = ../../..
 include ../../../inc/common.mk
 
 
 all:
 	mkdir -p out
 	# alas, our automated tests cannot output anything to stderr, as otherwise emails will be sent
-	python2 ${DESTBINDIR}/chromToUcsc -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null
+	python2 ${DESTBINDIR}/chromToUcsc -i in/hg19.bed -o out/hg19.bed -a hg19.chromAlias.tsv 2> /dev/null
 	python2 ${DESTBINDIR}/chromToUcsc  -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null
 	diff out/hg19.bed expected/hg19.bed
 	diff out/mm10.bed expected/mm10.bed
-	python3 ${DESTBINDIR}/chromToUcsc  -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null
+	python3 ${DESTBINDIR}/chromToUcsc  -i in/hg19.bed -o out/hg19.bed -a hg19.chromAlias.tsv 2> /dev/null
 	python3 ${DESTBINDIR}/chromToUcsc  -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null
 	diff out/hg19.bed expected/hg19.bed
 	diff out/mm10.bed expected/mm10.bed
+	python3 ${DESTBINDIR}/chromToUcsc  -i in/hg19.bed -o out/hg19.bed -a https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/chromAlias.txt.gz 2> /dev/null
+	diff out/hg19.bed expected/hg19.bed
 
 clean:
 	rm -f out/*