5f856345200f8861b168c85d45e267010d6b55e4
chmalee
  Mon Aug 3 16:40:33 2020 -0700
Update LOVD to bigBed, refs #25841

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 2a1ffb0..a5a27fb 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3661,55 +3661,91 @@
         track tcgaBrca
         shortLabel Breast
         longLabel Cancer mutations: TCGA Breast Cancer
         type bigBed 12 +
         release alpha
         bigDataUrl /gbdb/$D/bbi/cancerMutations/BRCA.bb
         urls case_id=https://portal.gdc.cancer.gov/cases/$$
         parent cancerMutations
 
 track lovdComp
 shortLabel LOVD Variants
 longLabel Leiden Open Variation Database Public Variants
 group phenDis
 visibility hide
 compositeTrack on
-type bedDetail 6
+type bigBed 4 +
 tableBrowser off lovdComp
 html lovdComp
+release alpha
+
+        track lovdShort
+        shortLabel LOVD Variants < 50bp
+        longLabel Leiden Open Variation Database, short < 50bp variants
+        group phenDis
+        visibility hide
+        urls id="http://varcache.lovd.nl/redirect/$$"
+        noScoreFilter on
+        bigDataUrl /gbdb/$D/lovd/lovd.$D.short.bb
+        parent lovdComp
+        release alpha
+
+        track lovdLong
+        shortLabel LOVD Variants >= 50bp
+        longLabel Leiden Open Variation Database Public Variants, long >= 50bp variants
+        group phenDis
+        visibility hide
+        urls id="http://varcache.lovd.nl/redirect/$$"
+        noScoreFilter on
+        bigDataUrl /gbdb/$D/lovd/lovd.$D.long.bb
+        parent lovdComp
+        release alpha
+
+track lovdComp
+shortLabel LOVD Variants
+longLabel Leiden Open Variation Database Public Variants
+group phenDis
+visibility hide
+compositeTrack on
+type bedDetail
+tableBrowser off lovdComp
+html lovdComp
+release beta,public
 
         track lovdShort
         shortLabel LOVD Variants < 50bp
         longLabel Leiden Open Variation Database, short < 50bp variants
         group phenDis
         visibility hide
         type bedDetail 6
         url http://varcache.lovd.nl/redirect/$$
         urlLabel Link to LOVD:
         noScoreFilter on
         parent lovdComp
+        release beta,public
 
         track lovdLong
         shortLabel LOVD Variants >= 50bp
         longLabel Leiden Open Variation Database Public Variants, long >= 50bp variants
         group phenDis
         visibility hide
         type bedDetail 6
         url http://varcache.lovd.nl/redirect/$$
         urlLabel Link to LOVD:
         noScoreFilter on
         parent lovdComp
+        release beta,public
 
 
 track hgmd
 shortLabel HGMD Variants
 longLabel Human Gene Mutation Database Public Variants
 group phenDis
 visibility hide
 itemRgb on
 type bigBed 9 .
 url http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p
 urlLabel Link to HGMD
 mouseOverField variantType
 tableBrowser off hgmd
 noScoreFilter on
 maxItems 1000