7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35
chmalee
  Wed Aug 5 14:06:59 2020 -0700
Stage genome in a bottle structural variants on dev, refs #24349

diff --git src/hg/utils/otto/dbVar/giabSv.as src/hg/utils/otto/dbVar/giabSv.as
new file mode 100644
index 0000000..cd5288e
--- /dev/null
+++ src/hg/utils/otto/dbVar/giabSv.as
@@ -0,0 +1,23 @@
+table giabSv 
+"Genome In a Bottle Structural Variants (dbVar nstd175)"
+    (
+    string chrom;      "Reference sequence chromosome or scaffold"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Short Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick (start codon)"
+    uint thickEnd;     "End of where display should be thick (stop codon)"
+    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    int size;          "Size of variant"
+    string varType;    "Type of structural variant"
+    string varRegion;     "Variant Region"
+    string dbVarUrl ;  "dbVar Region Link"
+    string sample_name; "Sample Name"
+    string sampleset_name; "Sampleset Name"
+    string phenotype;  "Phenotype"
+    string Variant_seq; "Variant Sequence"
+    string Reference_seq; "Reference Sequence"
+    lstring _mouseOver; "mouseover string"
+    )