7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35
chmalee
  Wed Aug 5 14:06:59 2020 -0700
Stage genome in a bottle structural variants on dev, refs #24349

diff --git src/hg/makeDb/trackDb/human/trackDb.giab.ra src/hg/makeDb/trackDb/human/trackDb.giab.ra
index 0c2fd11..5c4be13 100644
--- src/hg/makeDb/trackDb/human/trackDb.giab.ra
+++ src/hg/makeDb/trackDb/human/trackDb.giab.ra
@@ -1,45 +1,65 @@
 track giab
 shortLabel Genome In a Bottle
 longLabel Genome In a Bottle Structural Variants and Trios
 compositeTrack on
 visibility hide
 subGroup1 view Views trios=trios sv=Structural_Variants
 type bed 3
 group varRep
 
+    track svView
+    shortLabel Genome In a Bottle Structural Variants
+    longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
+    view sv
+    type bigBed 9 +
+    parent giab
+
+        track giabSv
+        parent svView
+        shortLabel Genome In a Bottle Structural Variants
+        longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
+        type bigBed 9 +
+        subGroups view=sv
+        itemRgb on
+        url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails
+        urlLabel dbVar Variant Details:
+        urls dbVarUrl="$$"
+        mouseOverField _mouseOver
+        bigDataUrl /gbdb/$D/giab/structuralVariants/giabSv.bb
+
     track triosView
     shortLabel Genome In a Bottle Trios
     longLabel Genome in a Bottle Ashkenazim and Chinese Trios
     view trios
     type vcfPhasedTrio
     parent giab
 
         track ashkenazimTrio
         parent triosView
         shortLabel Ashkenazim Trio
         longLabel Genome In a Bottle Ashkenazim Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/AshkenazimTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG002|son
         vcfParentSamples HG003|father,HG004|mother
 
         track chineseTrio
         parent triosView
         shortLabel Chinese  Trio
         longLabel Genome In a Bottle Chinese  Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/ChineseTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG005|son
         vcfParentSamples HG006|father,HG007|mother