58abbfd0de1d594241efa28e54f3886f28e3433a dschmelt Fri Aug 7 10:46:35 2020 -0700 Fixing grammar typos #25984 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 1e8ae43..670f037 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -55,44 +55,44 @@ <a name="080720"></a> <h2>Aug. 7 2020 Eight new data tracks for SARS-CoV-2 (COVID) </h2> <p> We are working hard to support the scientific effort against the COVID pandemic and are happy to announce eight new data track annotations for the SARS-CoV-2 genome. Like nearly all of our tracks, the data are open-access and downloadable through our <a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2"> Downloads page</a> or <a href="../../cgi-bin/hgTables">Table Browser</a> page. More information on each of these datasets can be obtained by reading the data track descriptions linked below.</p> <ul> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=problematicSites">Problematic sites</a> shows regions that are ambiguous and may warrant caution or masking for analysis.</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=rapid">RAPID Primers</a> marks regions that were successfully used for Nanopore sequencing. </li> -<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=unipCov2AliSwissprot">Updated UniProt proteins</a> -which displays UniProt protein sequences mapped to the SARS-CoV-2 genome</li> +<li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=unipCov2AliSwissprot">UniProt proteins</a> +was updated and displays protein sequences mapped to the SARS-CoV-2 genome.</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=phyloGenes">PhyloCSF Genes</a> -showing curated SARS-CoV-2 protein-coding genes conserved within the Sarbecovirus subgenus +shows curated SARS-CoV-2 protein-coding genes conserved within the Sarbecovirus subgenus as calculated with comparative genomics algorithms.</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=addgene">AddGene Plasmid Alignments</a> - describing sequences contained in Addgene plasmids that align to the SARS-CoV-2 genomes.</li> +describes sequences contained in Addgene plasmids that align to the SARS-CoV-2 genomes.</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=contacts">Protein Db Ligand Contact residues</a> -showing potential contact amino acids for ligands, inferred from structures in the Protein +shows potential contact amino acids for ligands, inferred from structures in the Protein Database (PDB).</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=nextstrainParsimony">Nextstrain Parsimony Scores</a> -showing scores of how variants are distributed in a phylogenetic tree.</li> +shows scores of how variants are distributed in a phylogenetic tree.</li> <li><a href="../../cgi-bin/hgTrackUi?db=wuhCor1&g=nextstrainFreq">Nextstrain variants frequency</a> -showing occurrence counts of each SARS-CoV-2 variant in GSAID sequences.</li> +shows occurrence counts of each SARS-CoV-2 variant in GSAID sequences.</li> </ul> <p> We would like to acknowledge the work of the UCSC Genome Browser team and the data collaborators. Thank you to the research community for creating, sharing, and using this important data to propel science in light of this pandemic.</p> <a name="080320"></a> <h2>Aug. 3, 2020 Annotated SNVs track for Rhesus Macaque (rheMac10)</h2> <p> We are pleased to announce an annotated SNVs track for the Rhesus macaque (rheMac10) assembly. SNVs were called using the Genome Analysis Toolkit (GATK), then the Variant Effect Predictor software was used to predict the functional consequence of SNVs. Ensembl release 98 gene models were used in the predictions, which are based on both Ensembl and RefSeq gene predictions as well as PacBio iso-seq data.</p>