74e2da5dec6a273fb4c2507ba8b70312451222da lrnassar Mon Aug 3 10:22:48 2020 -0700 Announcing rheMac10 annotated SNVs track refs #25602 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index d71e5b9..fc116ee 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,47 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="080320"></a> +<h2>Aug. 3, 2020 Annotated SNVs track for Rhesus Macaque (rheMac10)</h2> +<p> +We are pleased to announce an annotated SNVs track for the Rhesus macaque (rheMac10) assembly. +SNVs were called using the Genome Analysis Toolkit (GATK), then the Variant Effect Predictor +software was used to predict the functional consequence of SNVs. Ensembl release 98 gene models +were used in the predictions, which are based on both Ensembl and RefSeq gene predictions as +well as PacBio iso-seq data.</p> +<p> +For more information including a credits and methods section, see the <a target="_blank" +href="/cgi-bin/hgTrackUi?db=rheMac10&g=rhesusSNVs">track description page</a>.</p> +<p> +We would like to thank the Rhesus Macaque Genome Consortium and <a target="_blank" +href="https://www.hgsc.bcm.edu/non-human-primates/rhesus-monkey-genome-project"> +Jeff Rogers' lab at BCM-HGSC</a> for supplying the data for this track. We would +also like to thank Mark Diekhans and Lou Nassar for the development and release of this track.</p> + <a name="072720"></a> <h2>Jul. 27, 2020 New video: Making links to the Genome Browser. Part 2: Links inside genes and more tricks</h2> <p> We are happy to announce another release to the UCSC Genome Browser <a href = "https://bit.ly/ucscVideos" target = _blank>YouTube channel</a>. </p> <p> This new video, <a href = "https://bit.ly/ucscVid22" target = _blank>Making links to the UCSC Genome Browser. Part 2: Links inside genes and more tricks</a>, is Part Two of a three-part series showing how to make links to the Browser. This release features how to fashion a