e6a1df7168dd6c375eb74716d8083611b9373b7c
chmalee
  Thu Aug 13 17:05:34 2020 -0700
Turn DECIPHER into a bigBed so we can have filters and merge spanned items, refs #25841

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index add2dc2..dd98328 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -112,30 +112,55 @@
 color 200,0,0
 type bed 4
 url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=
 
 track decipher
 shortLabel DECIPHER CNVs
 longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (CNVs)
 group phenDis
 visibility hide
 color 0,0,0
 type bed 4
 tableBrowser off decipherRaw knownToDecipher knownCanonToDecipher
 prevExonText Left edge
 nextExonText Right edge
 
+track decipherCnv
+shortLabel Decipher CNV New
+longLabel Decipher CNV New
+group phenDis
+visibility hide
+type bigBed 9 +
+itemRgb on
+tableBrowser off
+bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
+url https://decipher.sanger.ac.uk/patient/$$
+urlLabel Decipher Patient View:
+filter.size 0
+filterByRange.size on
+filterLimits.size 2:170487333
+filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Triplication,Triplication
+filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
+mergeSpannedItems on
+searchIndex name
+mouseOverField _mouseOver
+release alpha
+
+searchTable  decipherCnv
+searchMethod exact
+searchType bigBed
+
 track decipherSnvs
 shortLabel DECIPHER SNVs
 longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
 group phenDis
 visibility hide
 color 0,0,0
 type bed 4
 tableBrowser off decipherSnvsRaw
 prevExonText Left edge
 nextExonText Right edge
 html decipher
 
 track phegeni
 shortLabel PheGenI SNPs
 longLabel NCBI Phenotype-Genotype Integrator SNPs