93d687b27a8bc7761d5f60b1ed11a943dcf6f199 lrnassar Fri Aug 14 15:34:53 2020 -0700 Bolding the uniprot track colors so they are clearer refs #25784 diff --git src/hg/makeDb/trackDb/uniprot.html src/hg/makeDb/trackDb/uniprot.html index 8d643b6..9d283c8 100644 --- src/hg/makeDb/trackDb/uniprot.html +++ src/hg/makeDb/trackDb/uniprot.html @@ -78,50 +78,50 @@ </tr> </table> <p> For consistency, the subtrack "UniProt/SwissProt Variants" is a copy of the track "UniProt Variants" in the track group "Phenotype and Literature", or "Variation and Repeats", depending on the assembly. </p> <h2>Display Conventions and Configuration</h2> <p> Genomic locations of UniProt/SwissProt annotations are labeled with a short name for the type of annotation (e.g. "glyco", "disulf bond", "Signal peptide" etc.). A click on them shows the full annotation and provides a link to the UniProt/SwissProt record for more details. TrEMBL annotations are always shown in -<span style="color: rgb(0,150,250)">light blue</span>, except in the Signal Peptides, +<span style="color: rgb(0,150,250)"><b>light blue</b></span>, except in the Signal Peptides, Extracellular Domains, Transmembrane Domains, and Cytoplamsic domains subtracks.</p> <p> Mouse over a feature to see the full UniProt annotation comment. For variants, the mouse over will show the full name of the UniProt disease acronym. </p> <p> The subtracks for domains related to subcellular location are sorted from outside to inside of -the cell: <span style="color: rgb(255,0,150)">Signal peptide</span>, -<span style="color: rgb(0,150,255)">extracellular</span>, <span style="color: rgb(0,150,0)"> -transmembrane</span>, and <span style="color: rgb(255,150,0)">cytoplasmic</span>. +the cell: <span style="color: rgb(255,0,150)"><b>Signal peptide</b></span>, +<span style="color: rgb(0,150,255)"><b>extracellular</b></span>, <span style="color: rgb(0,150,0)"> +<b>transmembrane</b></span>, and <span style="color: rgb(255,150,0)"><b>cytoplasmic</b></span>. </p> <p> In the "UniProt Modifications" track, lipoification sites are highlighted in -<span style="color: rgb(12,12,120)">dark blue</span>, glycosylation sites in -<span style="color: rgb(0,100,100)">dark green</span>, and phosphorylation in -<span style="color: rgb(200,200,0)">light green</span>.</p> +<span style="color: rgb(12,12,120)"><b>dark blue</b></span>, glycosylation sites in +<span style="color: rgb(0,100,100)"><b>dark green</b></span>, and phosphorylation in +<span style="color: rgb(200,200,0)"><b>light green</b></span>.</p> <p> Duplicate annotations are removed as far as possible: if a TrEMBL annotation has the same genome position and same feature type, comment, disease and mutated amino acids as a SwissProt annotation, it is not shown again. Two annotations mapped through different transcripts but with the same genome coordinates are only shown once. </p> <p>Note that only for the human hg38 assembly and SwissProt annotations, there also is a <a href="hgTracks?db=hg38&hubUrl=ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/hub.txt">public track hub</a> prepared by UniProt itself, with genome annotations maintained by UniProt using their own mapping method based on those Gencode/Ensembl gene models that are annotated in UniProt for a given protein.</p>