6220b9f75319ff66c8e033505bad4b0d0e7c98cd
max
  Thu Aug 13 06:23:42 2020 -0700
compositing the clinvar tracks again, refs #24850

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
index cca33a2..b4d2dc3 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
@@ -1,40 +1,53 @@
+track clinvar
+compositeTrack on
+shortLabel ClinVar Variants
+longLabel ClinVar Variants
+group phenDis
+visibility hide
+type bed 12 +
+itemRgb on
+urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+scoreLabel ClinVar Star-Rating (0-4)
+
         track clinvarMain
+        parent clinvar
         shortLabel ClinVar SNVs
         longLabel ClinVar Short Variants < 50bp
         visibility hide
         group phenDis
         itemRgb on
         priority 1
         type bigBed 12 +
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSignCode singleList
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
         filterType._originCode singleList
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode SNV|single nucleotide variant - SNV,INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
         filterType._allTypeCode singleList
         filter._varLen 0
         filterByRange._varLen on
         filterLimits._varLen 0:49
         filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
 
         track clinvarCnv
+        parent clinvar
         shortLabel ClinVar CNVs
         longLabel ClinVar Copy Number Variants  (mostly Copy-Number Variants)
         visibility hide
         type bigBed 12 +
         itemRgb on
         group phenDis
         priority 2
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
         filterType._originCode singleList
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
         filterType._allTypeCode singleList
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSign singleList
         filter._varLen 50:999999999