853914db4ca301e3d1db209c24b9a951dfbb5f4a braney Sun Sep 13 17:24:41 2020 -0700 adding all the bigLolly options to doc diff --git src/hg/htdocs/FAQ/FAQformat.html src/hg/htdocs/FAQ/FAQformat.html index 2536ea2..5d50cd0 100755 --- src/hg/htdocs/FAQ/FAQformat.html +++ src/hg/htdocs/FAQ/FAQformat.html @@ -1183,31 +1183,31 @@ <a name="format9.5"></a> <h2>bigNarrowPeak format</h2> <p> bigNarrowPeak is a format used to provide called peaks of signal enrichment based on pooled, normalized (interpreted) data. It is a BED6+4 format. bigNarrowPeak format is equivalent to the <a href="FAQformat.html#format12">narrowPeak</a> text-based format supported using the <a href="FAQformat.html#format1.5">bigBed</a> format, so it can be efficiently accessed over a network.</p> <p> Click <a href="../goldenPath/help/bigNarrowPeak.html">here</a> for more information on the bigNarrowPeak format.</p> <a name="format9.6"></a> <h2>bigLolly format</h2> <p> -bigLolly is a format used to draw a lollipop chart. It's a standard bigBed format where the score is used to decide how high to draw the lollipop. There are trackDb options to specify which fields to use for the height and width of the lollipop. +bigLolly is a format used to draw a lollipop chart. The data format is a standard bigBed format where by default the score is used to decide how high to draw the lollipop. There are also trackDb options to specify which fields to use for the height and width of the lollipop, as well as to draw lines on the graph. <p> Click <a href="../goldenPath/help/bigLolly.html">here</a> for more information on the bigLolly format.</p> <a name="format10"></a> <h2>Personal Genome SNP format</h2> <p> This format is for displaying SNPs from personal genomes. It is the same as is used for the Genome Variants and Population Variants tracks.</p> <ol> <li> <strong>chrom</strong> - The name of the chromosome (e.g. chr3, chrY, chr2_random) or scaffold (e.g. scaffold10671).</li> <li> <strong>chromStart</strong> - The starting position of the feature in the chromosome or scaffold.