c11260d13e2c55808aa97525c9e5c2205aa768ec chmalee Thu Sep 10 11:33:29 2020 -0700 Make hubCheck warn on missing description pages, refs #13428 diff --git src/hg/utils/hubCheck/hubCheck.c src/hg/utils/hubCheck/hubCheck.c index 7f7aa4f..a17bc41 100644 --- src/hg/utils/hubCheck/hubCheck.c +++ src/hg/utils/hubCheck/hubCheck.c @@ -780,38 +780,45 @@ { dyStringPrintf(errors, "trackData['%s'] = [", idName); } if (errCatchStart(errCatch)) { hubCheckParentsAndChildren(tdb); if (trackIsContainer) retVal |= hubCheckCompositeSettings(genome, tdb, errors, options); if (tdbIsSubtrack(tdb)) retVal |= hubCheckSubtrackSettings(genome, tdb, errors, options); if (options->checkFiles) hubCheckBigDataUrl(hub, genome, tdb); + trackHubAddDescription(genome->trackDbFile, tdb); + if (!tdb->html) + warn("missing description page for track: '%s'", tdb->track); } errCatchEnd(errCatch); if (errCatch->gotError) { trackDbErrorCount += 1; retVal = 1; trackDbErr(errors, errCatch->message->string, genome, tdb, options->htmlOut); } +if (errCatch->gotWarning) + { + trackDbErr(errors, errCatch->message->string, genome, tdb, options->htmlOut); + } errCatchFree(&errCatch); if (options->htmlOut) { if (trackIsContainer) { for (tempTdb = tdb->subtracks; tempTdb != NULL; tempTdb = tempTdb->next) { char subtrackName[512]; safef(subtrackName, sizeof(subtrackName), "%s_%s", trackHubSkipHubName(genome->name), trackHubSkipHubName(tempTdb->track)); textName = trackHubSkipHubName(tempTdb->longLabel); dyStringPrintf(errors, "%s,", makeFolderObjectString(subtrackName, textName, idName, "TRACK", TRUE, retVal)); } } else if (!retVal)