e10d4d9fdcabb4b010e978b894c70473597e6884 hiram Wed Sep 9 15:57:57 2020 -0700 need to have perChromTables = no for mm39 refs #22271 diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf index acc305f..7553170 100644 --- src/hg/makeDb/genbank/etc/genbank.conf +++ src/hg/makeDb/genbank/etc/genbank.conf @@ -612,30 +612,31 @@ GRCm38B.downloadDir = GRCm38B GRCm38B.refseq.mrna.xeno.load = yes GRCm38B.refseq.mrna.xeno.loadDesc = yes GRCm38B.genbank.mrna.xeno.load = yes #GRCm38B.mgc = yes #GRCm38B.orfeome = yes #GRCm38B.ccds.buildId = 21 #GRCm38B.genbank.mrna.blatTargetDb = yes # GRCm38B.upstreamGeneTbl = refGene # GRCm38B.upstreamMaf = multiz60way /hive/data/genomes/GRCm38B/bed/multiz60way/species.list # mm39 - (house mouse - GCA_000001635.9 - GRCm39) mm39.serverGenome = /hive/data/genomes/mm39/mm39.2bit mm39.ooc = /hive/data/genomes/mm39/jkStuff/mm39.11.ooc mm39.lift = /hive/data/genomes/mm39/jkStuff/mm39.5Kgaps.lft +mm39.perChromTables = no mm39.refseq.mrna.native.pslCDnaFilter = ${finished.refseq.mrna.native.pslCDnaFilter} mm39.refseq.mrna.xeno.pslCDnaFilter = ${finished.refseq.mrna.xeno.pslCDnaFilter} mm39.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter} mm39.genbank.mrna.xeno.pslCDnaFilter = ${finished.genbank.mrna.xeno.pslCDnaFilter} mm39.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter} mm39.downloadDir = mm39 mm39.refseq.mrna.xeno.load = yes mm39.refseq.mrna.xeno.loadDesc = yes mm39.genbank.mrna.xeno.load = yes mm39.genbank.mrna.blatTargetDb = yes mm39.upstreamGeneTbl = refGene # mm39.mgc = yes # mm39.orfeome = yes # mm39.ccds.buildId = 21 # mm39.upstreamMaf = multiz60way /hive/data/genomes/mm39/bed/multiz60way/species.list