f7a1de048f1e4a82213dfbce22ceddd33b095c0e
hiram
  Fri Sep 11 13:31:09 2020 -0700
adding definitions for calJac4 chainNet refs #24074

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.ra src/hg/makeDb/trackDb/trackDb.chainNet.ra
index b61d765..99ec464 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra
@@ -5090,130 +5090,30 @@
 
     track chainNetOtoGar1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetOtoGar1
 
         track netOtoGar1
         parent chainNetOtoGar1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment net
         type netAlign otoGar1 chainOtoGar1
         html chainNet
 
-track chainNetCalJac3
-compositeTrack on
-shortLabel $o_Organism Chain/Net
-longLabel $o_Organism ($o_date), Chain and Net Alignments
-subGroup1 view Views chain=Chain net=Net
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 260.3
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
-matrixHeader A, C, G, T
-otherDb calJac3
-chainMinScore 5000
-chainLinearGap medium
-html chainNet
-
-    track chainNetCalJac3Viewchain
-    shortLabel Chain
-    view chain
-    visibility pack
-    parent chainNetCalJac3
-    spectrum on
-
-        track chainCalJac3
-        parent chainNetCalJac3Viewchain
-        subGroups view=chain
-        shortLabel $o_Organism Chain
-        longLabel $o_Organism ($o_date) Chained Alignments
-        type chain calJac3
-        html chainNet
-
-    track chainNetCalJac3Viewnet
-    shortLabel Net
-    view net
-    visibility full
-    parent chainNetCalJac3
-
-        track netCalJac3
-        parent chainNetCalJac3Viewnet
-        subGroups view=net
-        shortLabel $o_Organism Net
-        longLabel $o_Organism ($o_date) Alignment net
-        type netAlign calJac3 chainCalJac3
-        html chainNet
-
-track chainNetCalJac1
-compositeTrack on
-shortLabel $o_db Chain/Net
-longLabel $o_Organism ($o_date), Chain and Net Alignments
-subGroup1 view Views chain=Chain net=Net
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 498
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-otherDb calJac1
-chainMinScore 3000
-chainLinearGap medium
-html chainNet
-
-    track chainNetCalJac1Viewchain
-    shortLabel Chain
-    view chain
-    visibility pack
-    parent chainNetCalJac1
-    spectrum on
-
-        track chainCalJac1
-        parent chainNetCalJac1Viewchain
-        subGroups view=chain
-        shortLabel $o_db Chain
-        longLabel $o_Organism ($o_date) Chained Alignments
-        type chain calJac1
-        html chainNet
-
-    track chainNetCalJac1Viewnet
-    shortLabel Net
-    view net
-    visibility full
-    parent chainNetCalJac1
-
-        track netCalJac1
-        parent chainNetCalJac1Viewnet
-        subGroups view=net
-        shortLabel $o_db Net
-        longLabel $o_Organism ($o_date) Alignment net
-        type netAlign calJac1 chainCalJac1
-        html chainNet
-
 track chainNetPapHam1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 240.3
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90