8fc4e664cc02754e5c4f435a6fa03b74e3636668
jcasper
  Sun Sep 13 01:11:47 2020 -0700
Installing updated hg.conf files from UCSC servers

diff --git confs/rr.hg.conf confs/rr.hg.conf
index 2093fa0..1edc8fc 100644
--- confs/rr.hg.conf
+++ confs/rr.hg.conf
@@ -19,31 +19,31 @@
 #  read/write/delete enabled for the Apache browser effective user
 
 # Programs required for per-SNP geographic maps of HGDP population
 # allele frequencies:
 hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy
 hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster
 hgc.ghostscriptPath=/usr/bin/ghostscript
 
 #hgHubConnect
 hgHubConnect.cacheDir=../trash/hgHubConnect/hubCrawlPublic
 #Allow hgHubConnect to run the hubCheck command
 hgHubConnect.validateHub=on
 
 # Setting speeds up the browser by caching large trackDb (such as big hubs)
 #cacheTrackDbDir=../trash/trackDbCache
-cacheTrackDbDir=/dev/shm/trackDbCache
+#cacheTrackDbDir=/dev/shm/trackDbCache
 
 # location of grepIndex files
 grepIndex.genbank=/gbdb/genbank/grepIndex
 grepIndex.default=/gbdb
 
 # wiki items to use the login system in the genomewiki for
 #       session management
 # Commented out by request from dschmelt 10/05/18
 login.systemName=hgLogin CGI
 #wiki.host=genome.ucsc.edu
 wiki.userNameCookie=wikidb_mw1_UserName
 wiki.loggedInCookie=wikidb_mw1_UserID
 #
 # wiki items used by the wiki track to allow editing and fetching
 #       pages from the genomewiki
@@ -132,17 +132,17 @@
 # The purpose of this directory is to allow automated cleaning of old files
 # from trash/ while keeping saved session files safe in a different location.
 sessionDataDir=/userdata/sessions/rr
 sessionDataDirOld=/userdata
 
 # Name prefix of 31 separate databases (one for each day of month, on same
 # server as customTrash, using customTracks.* profile) for custom track
 # database tables that belong to users' saved sessions, analogous to
 # sessionDataDir setting for saved session files.
 # The databases must be named as this prefix followed by {01, 02, 03, ... 31}.
 # For example, if the value is "customData" then the databases are named
 # customData01, customData02, ... customData31.
 sessionDataDbPrefix=customData
 
 # Path to executable and binary data file for hgPhyloPlace:
-addMissingSamplesPath=hgPhyloPlaceData/add_missing_samples
-addMissingSamplesAssignmentsPath=hgPhyloPlaceData/wuhCor1/rob-11-7-20.collapsed.noSeqEnds.pb
+addMissingSamplesPath=hgPhyloPlaceData/usher
+addMissingSamplesAssignmentsPath=hgPhyloPlaceData/wuhCor1/sarscov2phylo-28-08-20.collapsed.noSeqEnds.pb