2a9d32c161c59ec9bd5d055843618ab15a703ce1 kate Mon Sep 7 20:02:37 2020 -0700 Finishing touches to COVID GWAS track. refs #26129 diff --git src/hg/makeDb/trackDb/human/covidGwas.html src/hg/makeDb/trackDb/human/covidGwas.html index a38c9cc..72158c3 100644 --- src/hg/makeDb/trackDb/human/covidGwas.html +++ src/hg/makeDb/trackDb/human/covidGwas.html @@ -1,30 +1,30 @@ <H2>Description</H2> <p> This track set shows <b>GWAS meta-analyses</b> from the <a target=_blank href="https://www.covid19hg.org/"> -<b>COVID-19 Host Genetics Initiative (COVID-19 HGI)</b></a>, +<b>COVID-19 Host Genetics Initiative (HGI)</b></a>, a collaborative project bringing together the human genetics community to facilitate the generation, analysis and sharing of COVID-19 host genetics research. -The <i>COVID-19 HGI</i> organizes meta-analyses across multiple studies contributed by +The COVID-19 HGI organizes meta-analyses across multiple studies contributed by <a target="_blank" href="https://www.covid19hg.org/partners/">partners world-wide</a> to learn the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity and outcomes, and provides a platform to share the results from such activities, as well as the individual-level data where possible. </p> <p> -The specific phenotypes studied by the <i>COVID-19 HGI</i> are those that benefit +The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample size. The primary analysis focuses on disease severity. Two meta-analyses are represented in this track: <ul> <li><b>ANA_C2_V2</b>: covid vs. population (6696 cases from 18 studies)</li> <li><b>ANA_B2_V2</b>: hospitalized covid vs. population (3199 cases from 8 studies)</li> </ul> <H2>Display Conventions</H2> <p> Displayed items are colored by <b>GWAS effect</b>: red for positive, blue for negative. The height of the item reflects the <b>effect size</b> (log OR scale). The color saturation indicates <b>statistical significance</b>: greater than .05 pValue are brightly colored (bright red <span style='background-color: #ff0000;'> </span>